Variant report
| Variant | rs8007285 |
|---|---|
| Chromosome Location | chr14:25036898-25036899 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:25029679..25031256-chr14:25034240..25037011,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs11621263 | 0.85[GIH][hapmap] |
| rs1951137 | 0.89[CHB][hapmap] |
| rs1956907 | 0.90[ASN][1000 genomes] |
| rs1956921 | 0.89[CHB][hapmap] |
| rs2073335 | 0.89[CHB][hapmap] |
| rs2236742 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs8007970 | 0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1041336 | chr14:24726564-25527319 | Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 107 gene(s) | inside rSNPs | diseases |
| 2 | nsv542000 | chr14:24726564-25527319 | Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 107 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:9)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs8007285 | DHRS1 | cis | parietal | SCAN |
| rs8007285 | ABHD4 | cis | parietal | SCAN |
| rs8007285 | C14orf21 | cis | parietal | SCAN |
| rs8007285 | RNASE10 | cis | parietal | SCAN |
| rs8007285 | SDR39U1 | cis | cerebellum | SCAN |
| rs8007285 | SDR39U1 | cis | lymphoblastoid | seeQTL |
| rs8007285 | EDDM3A | cis | cerebellum | SCAN |
| rs8007285 | RNASE8 | cis | parietal | SCAN |
| rs8007285 | RPGRIP1 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:25033200-25043400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
