Variant report

Variant	rs1958364
Chromosome Location	chr14:32672170-32672171
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:32544618..32548147-chr14:32668083..32673759,9	K562	blood:
2	chr14:32544948..32548496-chr14:32669195..32673537,9	MCF-7	breast:
3	chr14:32544500..32547770-chr14:32669959..32673759,8	K562	blood:

Variant related genes	Relation type
ENSG00000258655	Chromatin interaction
ENSG00000100852	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11624220	1.00[ASN][1000 genomes]
rs17098697	1.00[ASN][1000 genomes]
rs17388327	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1958365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34186445	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35176317	1.00[ASN][1000 genomes]
rs35312946	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36004481	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55688151	1.00[ASN][1000 genomes]
rs61981813	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61981814	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7140557	1.00[ASN][1000 genomes]
rs7157943	1.00[ASN][1000 genomes]
rs72664699	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74043718	1.00[ASN][1000 genomes]
rs8012469	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832764	chr14:32564468-32723213	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv3527777	chr14:32669175-32761850	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3527778	chr14:32669175-32761850	Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32669200-32672400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr14:32669400-32672400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
3	chr14:32669400-32673600	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr14:32669600-32672400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr14:32669600-32673600	Flanking Active TSS	Primary B cells from cord blood	blood
6	chr14:32669600-32674000	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr14:32669800-32672400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
8	chr14:32669800-32673400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr14:32669800-32673400	Active TSS	Breast Myoepithelial Primary Cells	Breast
10	chr14:32669800-32673400	Active TSS	Fetal Heart	heart
11	chr14:32669800-32673800	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr14:32669800-32673800	Active TSS	Brain Anterior Caudate	brain
13	chr14:32669800-32674000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr14:32670000-32672200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
15	chr14:32670000-32672200	Flanking Active TSS	Adipose Nuclei	Adipose
16	chr14:32670000-32672200	Flanking Active TSS	Placenta	Placenta
17	chr14:32670000-32672400	Flanking Bivalent TSS/Enh	Dnd41	blood
18	chr14:32670000-32672400	Flanking Active TSS	HMEC	breast
19	chr14:32670000-32673200	Active TSS	Brain Cingulate Gyrus	brain
20	chr14:32670000-32673200	Active TSS	Thymus	Thymus
21	chr14:32670000-32673400	Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr14:32670000-32673400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr14:32670000-32673400	Active TSS	Fetal Brain Male	brain
24	chr14:32670000-32673400	Active TSS	Fetal Kidney	kidney
25	chr14:32670000-32673400	Active TSS	Left Ventricle	heart
26	chr14:32670000-32673400	Active TSS	Psoas Muscle	Psoas
27	chr14:32670000-32673400	Active TSS	Right Ventricle	heart
28	chr14:32670000-32673600	Active TSS	H9 Cell Line	embryonic stem cell
29	chr14:32670000-32673600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr14:32670000-32673600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr14:32670000-32673600	Active TSS	Ovary	ovary
32	chr14:32670000-32673600	Active TSS	Right Atrium	heart
33	chr14:32670000-32673800	Active TSS	Brain Angular Gyrus	brain
34	chr14:32670000-32673800	Active TSS	Brain Inferior Temporal Lobe	brain
35	chr14:32670000-32673800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
36	chr14:32670000-32673800	Active TSS	Fetal Muscle Leg	muscle
37	chr14:32670200-32673400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr14:32670200-32673400	Active TSS	Aorta	Aorta
39	chr14:32670200-32673400	Active TSS	Lung	lung
40	chr14:32670200-32673600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr14:32670200-32673600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
42	chr14:32670200-32673600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
43	chr14:32670200-32673600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr14:32670200-32673600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
45	chr14:32670400-32673200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr14:32670400-32673400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr14:32670400-32673400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr14:32670400-32673400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
49	chr14:32670600-32673400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr14:32670600-32673600	Active TSS	HSMM	muscle

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