Variant report

Variant	rs61981813
Chromosome Location	chr14:32687074-32687075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11624220	1.00[ASN][1000 genomes]
rs17098697	1.00[ASN][1000 genomes]
rs17388327	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1958364	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1958365	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34186445	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35176317	1.00[ASN][1000 genomes]
rs35312946	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36004481	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55688151	1.00[ASN][1000 genomes]
rs61981814	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7140557	1.00[ASN][1000 genomes]
rs7155347	0.83[EUR][1000 genomes]
rs7157943	1.00[ASN][1000 genomes]
rs72664699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74043718	1.00[ASN][1000 genomes]
rs8012469	1.00[ASN][1000 genomes]
rs8014494	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832764	chr14:32564468-32723213	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv3527777	chr14:32669175-32761850	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3527778	chr14:32669175-32761850	Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32673600-32688200	Weak transcription	Left Ventricle	heart
2	chr14:32673600-32692800	Weak transcription	Psoas Muscle	Psoas
3	chr14:32675800-32694000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:32686600-32687200	Enhancers	Primary hematopoietic stem cells	blood
5	chr14:32686800-32688200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr14:32686800-32694000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr14:32687000-32687200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr14:32687000-32687400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr14:32687000-32694000	Weak transcription	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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