Variant report

Variant	rs1958692
Chromosome Location	chr14:38349972-38349973
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10134624	0.82[CEU][hapmap]
rs10145136	0.82[CEU][hapmap]
rs10146385	0.80[CEU][hapmap]
rs10872905	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs11156973	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs11156974	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs1170022	0.82[CEU][hapmap];0.87[CHB][hapmap]
rs1170025	0.83[CHB][hapmap]
rs1170028	0.82[CEU][hapmap]
rs1170029	0.83[CEU][hapmap]
rs11851837	0.82[CEU][hapmap]
rs12147106	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12432452	0.83[CEU][hapmap];0.87[CHB][hapmap]
rs12882516	0.82[CEU][hapmap]
rs12883466	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs17554993	0.82[CEU][hapmap];0.81[CHB][hapmap]
rs1952789	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1952790	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1958693	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs1958694	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs1959676	0.80[CEU][hapmap]
rs2415421	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2415422	0.88[AMR][1000 genomes]
rs34953992	0.81[EUR][1000 genomes]
rs35272292	0.84[EUR][1000 genomes]
rs4143919	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs4901412	0.82[CEU][hapmap]
rs6571829	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs71407745	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71407747	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7154853	0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8005651	0.83[CEU][hapmap]
rs8015738	0.82[CEU][hapmap]
rs9322983	0.82[CEU][hapmap]
rs954881	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916985	chr14:38052347-38838551	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv1051120	chr14:38294270-38436127	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv542046	chr14:38294270-38436127	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv564386	chr14:38311855-38365605	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links