Variant report

Variant	rs9322983
Chromosome Location	chr14:38430898-38430899
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10134624	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10140719	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs10145136	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap]
rs10145337	0.89[EUR][1000 genomes]
rs10146385	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10220355	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10483495	0.89[CEU][hapmap]
rs10872905	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1113092	1.00[CEU][hapmap]
rs11156973	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs11156974	1.00[CEU][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs11621735	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs11622986	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs1170022	1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.89[LWK][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.86[YRI][hapmap]
rs1170023	0.92[CEU][hapmap];0.82[CHB][hapmap]
rs1170024	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1170025	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1170028	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1170029	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1170030	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs1170031	0.89[CEU][hapmap]
rs11851837	0.96[CEU][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes]
rs12147106	0.80[EUR][1000 genomes]
rs12432452	1.00[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap]
rs12435640	0.96[CEU][hapmap]
rs12590816	0.96[CEU][hapmap];0.80[GIH][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs12882516	1.00[CEU][hapmap];0.91[TSI][hapmap]
rs12883466	0.81[CHB][hapmap];0.82[CHD][hapmap]
rs17107343	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs17179919	0.96[CEU][hapmap];0.83[GIH][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes]
rs17554993	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1952787	0.96[CEU][hapmap];0.80[GIH][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes]
rs1952788	0.96[CEU][hapmap]
rs1952789	0.81[CHB][hapmap]
rs1952790	0.82[CEU][hapmap];0.81[MEX][hapmap];0.81[TSI][hapmap]
rs1958692	0.82[CEU][hapmap]
rs1958693	1.00[CEU][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs1958694	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1959676	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs2150322	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs2150323	0.83[CHB][hapmap]
rs2183531	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs2415421	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2415422	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35272292	0.84[EUR][1000 genomes]
rs3809444	0.96[CEU][hapmap];0.80[GIH][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs4143919	1.00[CEU][hapmap];0.82[YRI][hapmap];0.83[EUR][1000 genomes]
rs4322573	0.93[CEU][hapmap]
rs4597229	0.92[CEU][hapmap];0.83[CHB][hapmap];0.87[MEX][hapmap];0.85[EUR][1000 genomes]
rs4898785	0.93[CEU][hapmap];0.82[TSI][hapmap]
rs4901412	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs4901413	0.85[EUR][1000 genomes]
rs4901421	0.96[CEU][hapmap];0.80[GIH][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs4901422	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs4901423	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs6571829	0.96[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap]
rs6571830	0.96[CEU][hapmap]
rs71407745	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71407747	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7148370	0.89[EUR][1000 genomes]
rs7153182	0.89[EUR][1000 genomes]
rs7154853	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7155891	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs7158383	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8005651	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs8005895	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs8013747	0.96[CEU][hapmap];0.83[CHB][hapmap];0.87[MEX][hapmap];0.85[EUR][1000 genomes]
rs8014896	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs8015738	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap]
rs8020796	0.80[EUR][1000 genomes]
rs954881	1.00[CEU][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes]
rs9788473	0.96[CEU][hapmap]
rs9788476	0.96[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916985	chr14:38052347-38838551	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv1051120	chr14:38294270-38436127	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv542046	chr14:38294270-38436127	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv564387	chr14:38357864-38563111	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3365884	chr14:38419250-38438768	Weak transcription Enhancers ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
6	nsv901651	chr14:38419360-38556242	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9322983	C14orf19	cis	cerebellum	SCAN
rs9322983	C14orf147	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links