Variant report

Variant	rs4322573
Chromosome Location	chr14:38428172-38428173
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10134624	0.93[CEU][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes]
rs10140719	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10145136	0.93[CEU][hapmap];0.84[TSI][hapmap]
rs10145337	0.85[EUR][1000 genomes]
rs10146385	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs10483495	0.96[CEU][hapmap]
rs10872905	0.93[CEU][hapmap]
rs1113092	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11156973	0.92[CEU][hapmap]
rs11156974	0.93[CEU][hapmap];0.81[CHD][hapmap]
rs11621735	0.89[CEU][hapmap]
rs11622986	0.87[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1170022	0.93[CEU][hapmap]
rs1170023	0.84[CEU][hapmap]
rs1170024	0.88[EUR][1000 genomes]
rs1170025	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs1170028	0.93[CEU][hapmap];0.91[GIH][hapmap];0.88[EUR][1000 genomes]
rs1170029	0.93[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1170030	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs1170031	0.93[ASW][hapmap];0.96[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.87[JPT][hapmap];0.96[MEX][hapmap];0.88[MKK][hapmap];0.90[TSI][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11851837	0.88[CEU][hapmap];0.81[CHB][hapmap];0.81[CHD][hapmap]
rs12432452	0.92[CEU][hapmap]
rs12435640	0.89[CEU][hapmap];0.85[CHB][hapmap];0.95[YRI][hapmap]
rs12590816	0.89[CEU][hapmap];0.81[CHD][hapmap]
rs12882516	0.93[CEU][hapmap];0.83[CHD][hapmap]
rs17107343	0.89[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17179919	0.93[ASW][hapmap];0.89[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap]
rs17554993	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs1952787	0.85[ASW][hapmap];0.89[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap]
rs1952788	0.88[CEU][hapmap]
rs1958693	0.93[CEU][hapmap]
rs1958694	0.93[CEU][hapmap]
rs1959676	0.93[CEU][hapmap]
rs1959701	0.83[AMR][1000 genomes]
rs2150322	0.85[ASW][hapmap];0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.87[JPT][hapmap];0.87[MEX][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2183531	0.89[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.87[JPT][hapmap];0.87[MEX][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3809444	0.93[ASW][hapmap];0.89[CEU][hapmap];0.81[CHD][hapmap]
rs4143919	0.93[CEU][hapmap]
rs4597229	0.85[CEU][hapmap];0.88[GIH][hapmap];0.81[EUR][1000 genomes]
rs4898785	0.85[CEU][hapmap];0.81[CHD][hapmap]
rs4901412	0.92[CEU][hapmap]
rs4901421	0.89[CEU][hapmap];0.81[CHD][hapmap]
rs4901422	0.89[CEU][hapmap]
rs4901423	0.89[CEU][hapmap]
rs6571829	0.89[CEU][hapmap]
rs6571830	0.96[CEU][hapmap]
rs713226	0.81[CEU][hapmap]
rs7148370	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7153182	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7155891	0.88[CEU][hapmap]
rs7158383	0.87[EUR][1000 genomes]
rs8005651	0.93[CEU][hapmap]
rs8005895	0.89[CEU][hapmap]
rs8013747	0.89[CEU][hapmap];0.88[GIH][hapmap];0.81[EUR][1000 genomes]
rs8014454	0.85[ASN][1000 genomes]
rs8014896	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8015738	0.92[CEU][hapmap];0.87[TSI][hapmap]
rs8020796	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9322983	0.93[CEU][hapmap]
rs954881	0.86[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.92[MEX][hapmap];0.87[TSI][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9788473	0.89[CEU][hapmap]
rs9788476	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916985	chr14:38052347-38838551	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv1051120	chr14:38294270-38436127	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv542046	chr14:38294270-38436127	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv564387	chr14:38357864-38563111	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3365884	chr14:38419250-38438768	Weak transcription Enhancers ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
6	nsv901651	chr14:38419360-38556242	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4322573	CLEC14A	cis	parietal	SCAN
rs4322573	SRP54	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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