Variant report

Variant	rs12435640
Chromosome Location	chr14:38398230-38398231
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:38397859..38399776-chr14:38406213..38408130,2	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10134624	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs10140719	0.96[CEU][hapmap];0.82[CHB][hapmap];0.95[YRI][hapmap];0.84[EUR][1000 genomes]
rs10145136	0.96[CEU][hapmap]
rs10146385	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs10483495	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap]
rs10872905	0.93[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1113092	0.96[CEU][hapmap];0.85[CHB][hapmap]
rs11156973	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs11156974	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11621735	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11622986	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1170022	0.96[CEU][hapmap]
rs1170023	0.89[CEU][hapmap]
rs1170024	0.84[EUR][1000 genomes]
rs1170025	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs1170028	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs1170029	0.96[CEU][hapmap];0.95[CHB][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1170030	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1170031	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11851837	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12147106	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs12432452	0.96[CEU][hapmap]
rs12590816	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12882516	0.96[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap]
rs12883466	0.82[CEU][hapmap]
rs17107343	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17179919	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17554993	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs1952787	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1952788	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1952789	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs1958693	0.96[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1958694	0.93[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs1959676	0.96[CEU][hapmap]
rs2150322	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2183531	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35272292	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3809444	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4143919	0.93[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4322573	0.89[CEU][hapmap];0.85[CHB][hapmap];0.95[YRI][hapmap]
rs4597229	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs4898785	0.89[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs4901412	0.93[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4901413	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4901421	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4901422	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4901423	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6571829	1.00[CEU][hapmap]
rs6571830	1.00[CEU][hapmap]
rs7148370	0.82[EUR][1000 genomes]
rs7153182	0.82[EUR][1000 genomes]
rs7154853	0.83[CEU][hapmap];0.87[EUR][1000 genomes]
rs7155891	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7158383	0.80[EUR][1000 genomes]
rs8005651	0.96[CEU][hapmap]
rs8005895	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8013747	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs8014896	0.96[CEU][hapmap];0.95[CHB][hapmap];0.87[YRI][hapmap]
rs8015738	0.96[CEU][hapmap]
rs9322983	0.96[CEU][hapmap]
rs954881	0.96[CEU][hapmap];0.85[CHB][hapmap];0.86[YRI][hapmap];0.84[EUR][1000 genomes]
rs9788473	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs9788476	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916985	chr14:38052347-38838551	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv1051120	chr14:38294270-38436127	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv542046	chr14:38294270-38436127	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv564387	chr14:38357864-38563111	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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