Variant report

Variant	rs1968869
Chromosome Location	chr8:87115398-87115399
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:87115292..87116980-chr8:87121911..87124216,2	MCF-7	breast:

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10098631	0.88[ASN][1000 genomes]
rs10099368	0.88[ASN][1000 genomes]
rs10101407	0.87[ASN][1000 genomes]
rs10102252	0.85[ASN][1000 genomes]
rs10103166	0.83[ASN][1000 genomes]
rs10106391	0.88[ASN][1000 genomes]
rs10106497	0.87[ASN][1000 genomes]
rs10107781	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10112076	0.88[ASN][1000 genomes]
rs10504819	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10955870	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11988449	0.90[ASN][1000 genomes]
rs12677162	0.82[ASN][1000 genomes]
rs12682430	0.92[ASN][1000 genomes]
rs13257877	0.87[ASN][1000 genomes]
rs13260768	0.88[ASN][1000 genomes]
rs13267067	0.83[ASN][1000 genomes]
rs13274057	0.87[ASN][1000 genomes]
rs13281890	0.85[ASN][1000 genomes]
rs1351777	0.87[ASN][1000 genomes]
rs1384878	0.90[ASN][1000 genomes]
rs1384879	0.90[ASN][1000 genomes]
rs1483765	0.84[ASN][1000 genomes]
rs16881545	0.84[ASN][1000 genomes]
rs16883602	0.85[ASN][1000 genomes]
rs16887456	0.88[ASN][1000 genomes]
rs1872135	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2220106	0.85[ASN][1000 genomes]
rs2318396	0.87[ASN][1000 genomes]
rs2318936	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28415682	0.88[ASN][1000 genomes]
rs2873692	0.88[ASN][1000 genomes]
rs35216834	0.82[ASN][1000 genomes]
rs35910910	0.92[ASN][1000 genomes]
rs4370510	0.84[ASN][1000 genomes]
rs4960948	0.85[ASN][1000 genomes]
rs4960953	0.90[ASN][1000 genomes]
rs4960954	0.89[ASN][1000 genomes]
rs4960955	0.87[ASN][1000 genomes]
rs4960959	0.88[ASN][1000 genomes]
rs4961071	0.85[ASN][1000 genomes]
rs4961074	0.85[ASN][1000 genomes]
rs4961075	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4961077	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4961078	0.92[ASN][1000 genomes]
rs4961092	0.85[ASN][1000 genomes]
rs57368948	0.83[ASN][1000 genomes]
rs57651622	0.85[ASN][1000 genomes]
rs57962008	0.85[ASN][1000 genomes]
rs58243820	0.85[ASN][1000 genomes]
rs59028033	0.85[ASN][1000 genomes]
rs60506092	0.92[ASN][1000 genomes]
rs61629815	0.85[ASN][1000 genomes]
rs62509924	0.84[ASN][1000 genomes]
rs62509930	0.85[ASN][1000 genomes]
rs62509933	0.84[ASN][1000 genomes]
rs6469703	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6981194	0.93[ASN][1000 genomes]
rs6993377	0.92[ASN][1000 genomes]
rs7000491	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7001674	0.87[ASN][1000 genomes]
rs7001699	0.87[ASN][1000 genomes]
rs7005999	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7016268	0.87[ASN][1000 genomes]
rs7813508	0.85[ASN][1000 genomes]
rs7821560	0.87[ASN][1000 genomes]
rs7831328	0.87[ASN][1000 genomes]
rs7836003	0.92[ASN][1000 genomes]
rs7837251	0.88[ASN][1000 genomes]
rs7846145	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9643132	0.89[ASN][1000 genomes]
rs9643143	0.87[ASN][1000 genomes]
rs9643144	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428204	chr8:86405478-87312208	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv529563	chr8:86467090-87381984	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv1028959	chr8:86835367-87142383	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv891147	chr8:86886950-87333968	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv1034721	chr8:86977250-87131151	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv891148	chr8:86987886-87149808	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv891149	chr8:87023306-87167184	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv1034855	chr8:87040075-87168730	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
10	nsv611673	chr8:87106710-87136320	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	esv2761443	chr8:87109368-87170814	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
12	nsv1020115	chr8:87111707-87167790	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv1026646	chr8:87111707-87177368	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87082400-87126200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:87111400-87120200	Weak transcription	Stomach Mucosa	stomach
3	chr8:87113800-87115800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:87114000-87115400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:87114400-87115600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr8:87114600-87120000	Weak transcription	Hela-S3	cervix
7	chr8:87114600-87120000	Weak transcription	NHEK	skin
8	chr8:87115000-87120000	Weak transcription	HMEC	breast
9	chr8:87115000-87120000	Weak transcription	NH-A	brain
10	chr8:87115000-87120200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:87115200-87121000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links