Variant report

Variant	rs7001674
Chromosome Location	chr8:87125102-87125103
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:87125042..87127578-chr8:87129260..87131341,2	MCF-7	breast:

Extended variants
information (count: 124 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10097379	0.86[JPT][hapmap]
rs10098631	0.87[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.89[ASN][1000 genomes]
rs10099368	0.87[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs10101407	0.88[ASN][1000 genomes]
rs10102252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10103166	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10106391	0.87[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.89[ASN][1000 genomes]
rs10106497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10112076	0.87[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.89[ASN][1000 genomes]
rs10112474	0.81[JPT][hapmap]
rs10504819	0.87[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs10955870	0.81[ASN][1000 genomes]
rs11988449	1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12156049	0.83[CHB][hapmap]
rs12541053	0.81[JPT][hapmap]
rs12546618	0.81[JPT][hapmap]
rs12677162	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12682430	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs13252217	0.83[CHB][hapmap]
rs13254996	0.86[JPT][hapmap]
rs13257877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13260768	0.89[ASN][1000 genomes]
rs13265507	0.81[JPT][hapmap]
rs13267067	0.87[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.84[ASN][1000 genomes]
rs13272356	0.81[JPT][hapmap]
rs13274057	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13280528	0.81[JPT][hapmap]
rs13281890	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13282492	0.81[JPT][hapmap]
rs1351777	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1384877	0.83[CHB][hapmap]
rs1384878	1.00[ASW][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1384879	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs1483765	0.87[ASN][1000 genomes]
rs1601151	0.83[CHB][hapmap]
rs16876450	0.83[CHB][hapmap]
rs16881545	0.95[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs16883602	1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs16887456	0.87[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.88[LWK][hapmap];0.82[YRI][hapmap];0.89[ASN][1000 genomes]
rs1872135	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs1968869	0.87[ASN][1000 genomes]
rs2220106	0.87[ASN][1000 genomes]
rs2318396	0.87[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.88[LWK][hapmap];0.82[YRI][hapmap];0.88[ASN][1000 genomes]
rs2318936	0.87[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs2626333	0.86[JPT][hapmap]
rs2626337	0.86[JPT][hapmap]
rs2626338	0.86[JPT][hapmap]
rs2626341	0.86[JPT][hapmap]
rs2626343	0.86[JPT][hapmap]
rs2721248	0.86[JPT][hapmap]
rs2721252	0.82[CHD][hapmap];0.86[JPT][hapmap]
rs2721255	0.86[JPT][hapmap]
rs28415682	0.89[ASN][1000 genomes]
rs2873692	0.89[ASN][1000 genomes]
rs35216834	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35910910	0.94[ASN][1000 genomes]
rs3802225	0.83[CHB][hapmap]
rs4076881	0.81[JPT][hapmap]
rs4311641	0.81[JPT][hapmap]
rs4370510	0.85[ASN][1000 genomes]
rs4443642	0.81[JPT][hapmap]
rs4571715	0.81[JPT][hapmap]
rs4960948	0.87[ASN][1000 genomes]
rs4960953	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs4960954	0.92[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4960955	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4960959	0.87[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.88[LWK][hapmap];0.82[YRI][hapmap];0.89[ASN][1000 genomes]
rs4961044	0.83[CHB][hapmap]
rs4961045	0.83[CHB][hapmap]
rs4961068	0.91[CHB][hapmap]
rs4961071	0.87[ASN][1000 genomes]
rs4961072	0.81[ASN][1000 genomes]
rs4961074	1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs4961075	0.81[ASN][1000 genomes]
rs4961077	0.83[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs4961078	0.94[ASN][1000 genomes]
rs4961092	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57368948	0.86[ASN][1000 genomes]
rs57651622	0.87[ASN][1000 genomes]
rs57962008	0.87[ASN][1000 genomes]
rs58243820	0.87[ASN][1000 genomes]
rs59028033	0.87[ASN][1000 genomes]
rs60506092	0.94[ASN][1000 genomes]
rs61629815	0.87[ASN][1000 genomes]
rs62509924	0.86[ASN][1000 genomes]
rs62509930	0.87[ASN][1000 genomes]
rs62509933	0.85[ASN][1000 genomes]
rs6469703	0.83[ASN][1000 genomes]
rs6470428	0.81[JPT][hapmap]
rs6470714	0.81[JPT][hapmap]
rs6981194	0.92[ASN][1000 genomes]
rs6993377	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs6996246	0.81[JPT][hapmap]
rs6999252	0.86[JPT][hapmap]
rs7000491	0.83[ASN][1000 genomes]
rs7001699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7005999	0.83[ASN][1000 genomes]
rs7016268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017607	0.81[JPT][hapmap]
rs7350116	0.81[JPT][hapmap]
rs7813508	1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs7821560	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7830744	0.83[CHB][hapmap]
rs7831328	0.89[ASN][1000 genomes]
rs7836003	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs7837251	0.87[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs7846145	0.87[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs9643132	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs9643143	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9643144	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs975817	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428204	chr8:86405478-87312208	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv529563	chr8:86467090-87381984	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv1028959	chr8:86835367-87142383	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv891147	chr8:86886950-87333968	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv1034721	chr8:86977250-87131151	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv891148	chr8:86987886-87149808	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv891149	chr8:87023306-87167184	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv1034855	chr8:87040075-87168730	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
10	nsv611673	chr8:87106710-87136320	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	esv2761443	chr8:87109368-87170814	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
12	nsv1020115	chr8:87111707-87167790	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv1026646	chr8:87111707-87177368	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7001674	OSGIN2	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87082400-87126200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:87122200-87126200	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr8:87122200-87127200	Weak transcription	Stomach Mucosa	stomach
4	chr8:87122400-87126000	Weak transcription	Primary monocytes fromperipheralblood	blood

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