Variant report
| Variant | rs197023 |
|---|---|
| Chromosome Location | chrX:109968387-109968388 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs10047014 | 1.00[CHB][hapmap] |
| rs10126502 | 1.00[CHB][hapmap] |
| rs12012172 | 1.00[CHB][hapmap] |
| rs12857107 | 1.00[CHB][hapmap] |
| rs191800 | 1.00[CHB][hapmap] |
| rs197036 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap] |
| rs2016878 | 1.00[CHB][hapmap] |
| rs2206971 | 1.00[CHB][hapmap] |
| rs2223782 | 1.00[CHB][hapmap] |
| rs2404177 | 1.00[CHB][hapmap] |
| rs5942660 | 1.00[CHB][hapmap] |
| rs5942661 | 1.00[CHB][hapmap] |
| rs5942674 | 1.00[CHB][hapmap];0.87[MKK][hapmap] |
| rs5942675 | 1.00[CHB][hapmap] |
| rs5942676 | 1.00[CHB][hapmap] |
| rs5942677 | 1.00[CHB][hapmap] |
| rs5942678 | 1.00[CHB][hapmap] |
| rs5942680 | 1.00[CHB][hapmap] |
| rs5942681 | 1.00[CHB][hapmap] |
| rs5943019 | 1.00[CHB][hapmap] |
| rs5943044 | 1.00[CHB][hapmap] |
| rs5943045 | 1.00[CHB][hapmap] |
| rs5943046 | 1.00[CHB][hapmap] |
| rs5943047 | 1.00[CHB][hapmap] |
| rs5943048 | 1.00[CHB][hapmap] |
| rs5943050 | 1.00[CHB][hapmap] |
| rs5943051 | 1.00[CHB][hapmap] |
| rs5943052 | 1.00[CHB][hapmap] |
| rs5943053 | 1.00[CHB][hapmap] |
| rs5943055 | 1.00[CHB][hapmap] |
| rs5943056 | 1.00[CHB][hapmap] |
| rs5943057 | 1.00[CHB][hapmap] |
| rs5985302 | 1.00[CHB][hapmap] |
| rs5985519 | 1.00[CHB][hapmap] |
| rs5985544 | 1.00[CHB][hapmap] |
| rs5985545 | 1.00[CHB][hapmap] |
| rs5985546 | 1.00[CHB][hapmap] |
| rs7060124 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817233 | chrX:109693720-110244649 | Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv7037 | chrX:109927893-109972675 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chrX:109942600-110008200 | Weak transcription | Primary hematopoietic stem cells | blood |
| 2 | chrX:109958200-109975400 | Weak transcription | Adipose Nuclei | Adipose |
