Variant report

Variant	rs197036
Chromosome Location	chrX:109987704-109987705
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10047014	1.00[CHB][hapmap]
rs10126502	1.00[CHB][hapmap]
rs12012172	1.00[CHB][hapmap]
rs12857107	1.00[CHB][hapmap]
rs1556803	1.00[CHB][hapmap];0.88[TSI][hapmap]
rs191800	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs197023	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap]
rs2016878	1.00[CHB][hapmap]
rs2206971	1.00[CHB][hapmap]
rs2223782	1.00[CHB][hapmap]
rs2404177	1.00[CHB][hapmap]
rs5942660	1.00[CHB][hapmap]
rs5942661	1.00[CHB][hapmap]
rs5942674	1.00[CHB][hapmap];0.87[MKK][hapmap]
rs5942675	1.00[CHB][hapmap]
rs5942676	1.00[CHB][hapmap]
rs5942677	1.00[CHB][hapmap]
rs5942678	1.00[CHB][hapmap]
rs5942680	1.00[CHB][hapmap]
rs5942681	1.00[CHB][hapmap]
rs5943019	1.00[CHB][hapmap]
rs5943044	1.00[CHB][hapmap]
rs5943045	1.00[CHB][hapmap]
rs5943046	1.00[CHB][hapmap]
rs5943047	1.00[CHB][hapmap]
rs5943048	1.00[CHB][hapmap]
rs5943050	1.00[CHB][hapmap]
rs5943051	1.00[CHB][hapmap]
rs5943052	1.00[CHB][hapmap]
rs5943053	1.00[CHB][hapmap]
rs5943055	1.00[CHB][hapmap]
rs5943056	1.00[CHB][hapmap]
rs5943057	1.00[CHB][hapmap]
rs5985302	1.00[CHB][hapmap]
rs5985519	1.00[CHB][hapmap]
rs5985544	1.00[CHB][hapmap]
rs5985545	1.00[CHB][hapmap]
rs5985546	1.00[CHB][hapmap]
rs7060124	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817233	chrX:109693720-110244649	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109942600-110008200	Weak transcription	Primary hematopoietic stem cells	blood
2	chrX:109978600-109989000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chrX:109986200-109989000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chrX:109986400-109989800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chrX:109986400-109989800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chrX:109986600-109988600	Enhancers	Rectal Smooth Muscle	rectum
7	chrX:109986600-109989600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chrX:109986800-109987800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chrX:109986800-109989800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chrX:109987000-109987800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chrX:109987000-109988200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chrX:109987000-109989000	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chrX:109987000-109989200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chrX:109987200-109987800	Weak transcription	Fetal Brain Male	brain
15	chrX:109987200-109987800	Bivalent Enhancer	Fetal Lung	lung
16	chrX:109987200-109988200	Enhancers	Fetal Stomach	stomach
17	chrX:109987200-109988800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chrX:109987200-109988800	Enhancers	Adipose Nuclei	Adipose
19	chrX:109987200-109989000	Enhancers	NHDF-Ad	bronchial
20	chrX:109987400-109989000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chrX:109987600-109988600	Weak transcription	NHLF	lung
22	chrX:109987600-109989000	Enhancers	Colon Smooth Muscle	Colon
23	chrX:109987600-109993200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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