Variant report

Variant	rs2206971
Chromosome Location	chrX:109909035-109909036
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:109693064..109693985-chrX:109908617..109909561,3	K562	blood:
2	chrX:109693246..109694472-chrX:109908472..109909524,4	MCF-7	breast:
3	chrX:109831427..109832479-chrX:109908752..109909575,4	MCF-7	breast:
4	chrX:109693339..109693928-chrX:109908637..109909553,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000243978	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10047014	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10126502	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12012172	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12395955	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12396834	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12857107	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs191800	1.00[CHB][hapmap]
rs197023	1.00[CHB][hapmap]
rs197036	1.00[CHB][hapmap]
rs2016878	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs2223782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs2404177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs5942660	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5942661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5942674	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5942675	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5942676	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5942677	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5942678	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs5942680	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5942681	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap]
rs5942953	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5942955	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5943019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5943044	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap]
rs5943045	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5943046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs5943047	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5943048	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5943050	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5943051	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5943052	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5943053	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs5943055	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5943056	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5943057	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5985302	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5985519	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5985544	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5985545	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5985546	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7060124	0.95[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817233	chrX:109693720-110244649	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109909000-109910600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chrX:109909000-109910600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chrX:109909000-109910600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chrX:109909000-109910600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chrX:109909000-109910600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chrX:109909000-109910800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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