Variant report

Variant	rs5942953
Chromosome Location	chrX:109761850-109761851
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10047014	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs10126502	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap]
rs10521528	1.00[MEX][hapmap];0.91[TSI][hapmap]
rs12006849	1.00[CHB][hapmap];0.93[MEX][hapmap];0.94[TSI][hapmap]
rs12012172	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs12395955	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap]
rs12396834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12857107	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap]
rs2016878	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs2073785	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[MEX][hapmap];0.94[TSI][hapmap]
rs2073787	1.00[CHB][hapmap]
rs2206971	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2223782	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap]
rs2404177	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap]
rs5942660	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap]
rs5942661	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5942674	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.93[MEX][hapmap]
rs5942675	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap]
rs5942676	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs5942677	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap]
rs5942678	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs5942680	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.85[MEX][hapmap]
rs5942681	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap]
rs5942931	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[MEX][hapmap];0.94[TSI][hapmap]
rs5942955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs5943019	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap]
rs5943044	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs5943045	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs5943046	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap]
rs5943047	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs5943048	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];0.85[MEX][hapmap]
rs5943050	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs5943051	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs5943052	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap]
rs5943053	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap]
rs5943055	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs5943056	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs5943057	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap]
rs5985302	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap]
rs5985519	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5985544	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap]
rs5985545	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs5985546	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.92[MEX][hapmap]
rs6655082	0.93[MEX][hapmap];0.91[TSI][hapmap]
rs7060124	0.89[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817233	chrX:109693720-110244649	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109754800-109763200	Weak transcription	H9 Cell Line	embryonic stem cell

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