Variant report
| Variant | rs12006849 |
|---|---|
| Chromosome Location | chrX:109693443-109693444 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:209)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RGAG1 | TF binding region |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs10521528 | 0.90[CEU][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap] |
| rs12395955 | 1.00[CHB][hapmap];0.93[MEX][hapmap];0.94[TSI][hapmap] |
| rs12396834 | 1.00[CHB][hapmap] |
| rs17320750 | 1.00[JPT][hapmap] |
| rs2073785 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap] |
| rs2073787 | 0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2883091 | 0.90[CEU][hapmap];1.00[JPT][hapmap] |
| rs5942660 | 1.00[CHB][hapmap];0.85[TSI][hapmap] |
| rs5942661 | 1.00[CHB][hapmap] |
| rs5942931 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap] |
| rs5942953 | 1.00[CHB][hapmap];0.93[MEX][hapmap];0.94[TSI][hapmap] |
| rs5942955 | 1.00[CHB][hapmap] |
| rs5943019 | 1.00[CHB][hapmap];0.93[MEX][hapmap];0.85[TSI][hapmap] |
| rs5985519 | 1.00[CHB][hapmap] |
| rs6655082 | 0.90[CEU][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530248 | chrX:109436208-109743686 | Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | esv2758583 | chrX:109581771-109711481 | Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 3 | esv2758884 | chrX:109581771-109711481 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chrX:109683600-109694200 | Enhancers | Liver | Liver |
