Variant report

Variant	rs6655082
Chromosome Location	chrX:109689468-109689469
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10521528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap]
rs12006849	0.90[CEU][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap]
rs12395955	0.93[MEX][hapmap];0.91[TSI][hapmap]
rs17320750	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2073785	0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs2073787	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs2883091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5942660	0.88[TSI][hapmap]
rs5942931	0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs5942953	0.93[MEX][hapmap];0.91[TSI][hapmap]
rs5943019	0.93[MEX][hapmap];0.88[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530248	chrX:109436208-109743686	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2758583	chrX:109581771-109711481	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2758884	chrX:109581771-109711481	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109683600-109694200	Enhancers	Liver	Liver
2	chrX:109688200-109689600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
3	chrX:109688400-109690200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chrX:109689400-109691200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chrX:109689400-109691400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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