Variant report

Variant	rs2883091
Chromosome Location	chrX:109684139-109684140
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10521528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12006849	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs17320750	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2073785	1.00[JPT][hapmap]
rs2073787	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs5942927	0.87[YRI][hapmap]
rs5942931	1.00[JPT][hapmap]
rs6655082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs768312	0.94[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530248	chrX:109436208-109743686	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2758583	chrX:109581771-109711481	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2758884	chrX:109581771-109711481	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109679800-109688400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chrX:109683200-109688000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chrX:109683400-109684600	Enhancers	GM12878-XiMat	blood
4	chrX:109683400-109688200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chrX:109683400-109688200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chrX:109683600-109685600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chrX:109683600-109694200	Enhancers	Liver	Liver
8	chrX:109683800-109689000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chrX:109684000-109685800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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