Variant report

Variant	rs768312
Chromosome Location	chrX:109671384-109671385
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2883091	0.94[YRI][hapmap]
rs5942633	1.00[CEU][hapmap]
rs5942927	1.00[CEU][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530248	chrX:109436208-109743686	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2758583	chrX:109581771-109711481	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2758884	chrX:109581771-109711481	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109662800-109671400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chrX:109664800-109680600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chrX:109670000-109671600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
4	chrX:109671200-109671400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chrX:109671200-109671400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
6	chrX:109671200-109671400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
7	chrX:109671200-109671600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links