Variant report

Variant	rs5942927
Chromosome Location	chrX:109678670-109678671
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2883091	0.87[YRI][hapmap]
rs5942633	1.00[CEU][hapmap]
rs768312	1.00[CEU][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530248	chrX:109436208-109743686	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2758583	chrX:109581771-109711481	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2758884	chrX:109581771-109711481	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109664800-109680600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chrX:109674200-109680000	Bivalent Enhancer	Fetal Muscle Leg	muscle
3	chrX:109676000-109679800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chrX:109677400-109682800	Enhancers	Liver	Liver
5	chrX:109677800-109679400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chrX:109678000-109679800	Enhancers	Fetal Intestine Small	intestine
7	chrX:109678000-109680400	Enhancers	HepG2	liver
8	chrX:109678600-109678800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
9	chrX:109678600-109679600	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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