Variant report

Variant	rs10521528
Chromosome Location	chrX:109689152-109689153
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:109688971..109691125-chrX:109695337..109697102,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12006849	0.90[CEU][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap]
rs12395955	1.00[MEX][hapmap];0.91[TSI][hapmap]
rs17320750	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2073785	0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap]
rs2073787	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs2883091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5942660	0.88[TSI][hapmap]
rs5942931	0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap]
rs5942953	1.00[MEX][hapmap];0.91[TSI][hapmap]
rs5943019	1.00[MEX][hapmap];0.88[TSI][hapmap]
rs6655082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530248	chrX:109436208-109743686	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2758583	chrX:109581771-109711481	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2758884	chrX:109581771-109711481	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109683600-109694200	Enhancers	Liver	Liver
2	chrX:109685800-109689200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chrX:109687600-109689400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chrX:109688000-109689200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chrX:109688000-109689400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chrX:109688000-109689400	Bivalent Enhancer	NHEK	skin
7	chrX:109688200-109689400	Enhancers	H1 Cell Line	embryonic stem cell
8	chrX:109688200-109689400	Enhancers	H9 Cell Line	embryonic stem cell
9	chrX:109688200-109689400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chrX:109688200-109689400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chrX:109688200-109689600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
12	chrX:109688400-109689200	Bivalent Enhancer	Fetal Muscle Leg	muscle
13	chrX:109688400-109690200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chrX:109688600-109689400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
15	chrX:109688800-109689200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chrX:109688800-109689400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chrX:109688800-109689400	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chrX:109689000-109689200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chrX:109689000-109689200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
20	chrX:109689000-109689400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chrX:109689000-109689400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
22	chrX:109689000-109689400	Bivalent Enhancer	Stomach Mucosa	stomach

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