Variant report

Variant	rs1973326
Chromosome Location	chr7:137879380-137879381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10268501	0.83[EUR][1000 genomes]
rs1489634	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1552583	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1973325	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4321918	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7785014	0.86[EUR][1000 genomes]
rs7785037	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7794092	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137873600-137880200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:137873600-137893800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:137878000-137881600	Enhancers	Lung	lung
4	chr7:137878200-137880600	Enhancers	HepG2	liver
5	chr7:137878600-137879600	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr7:137878600-137884000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr7:137878800-137879800	Weak transcription	Stomach Mucosa	stomach
8	chr7:137878800-137880200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr7:137878800-137880600	Enhancers	Pancreas	Pancrea
10	chr7:137879000-137880200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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