Variant report

Variant	rs7794092
Chromosome Location	chr7:137888939-137888940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10268501	0.86[EUR][1000 genomes]
rs1489634	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1552583	1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.88[MEX][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1973325	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1973326	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2450848	1.00[JPT][hapmap]
rs2465076	0.81[JPT][hapmap]
rs2718128	0.93[JPT][hapmap]
rs4321918	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7785014	0.84[EUR][1000 genomes]
rs7785037	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831152	chr7:137884311-138033117	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7794092	TRIM24	cis	multi-tissue	Pritchard
rs7794092	SULT1B1	trans	multi-tissue	Pritchard
rs7794092	FLJ10652	trans	multi-tissue	Pritchard
rs7794092	AKR1B1	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137873600-137893800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:137880400-137893800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:137887600-137889600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:137887600-137891000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:137888000-137890600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:137888000-137891000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr7:137888000-137891200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr7:137888200-137891000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr7:137888600-137889600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr7:137888600-137890000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr7:137888600-137890200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr7:137888600-137890200	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr7:137888600-137890400	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr7:137888600-137892600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr7:137888600-137893200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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