Variant report

Variant	rs1974313
Chromosome Location	chr8:131275315-131275316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:131273772..131275744-chr8:131368224..131371036,2	MCF-7	breast:
2	chr8:131274673..131277177-chr8:131288915..131291694,2	K562	blood:
3	chr8:131267673..131269776-chr8:131275129..131276905,2	K562	blood:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10091130	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10109236	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10505548	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10505549	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10956513	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10956515	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10956517	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10956525	0.82[CEU][hapmap]
rs11779014	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11781752	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11786705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12541083	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12541938	0.83[AFR][1000 genomes]
rs12542411	0.84[AFR][1000 genomes]
rs12545910	0.85[EUR][1000 genomes]
rs12546088	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12546603	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12547397	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12547540	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12675390	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs12676836	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12679283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12681954	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12681955	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1417007	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1469286	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1549455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16893271	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16904197	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs16904199	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16904204	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs16904208	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16904212	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes]
rs16904219	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16904223	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16904231	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16904239	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16904241	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16904242	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16904249	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1960661	0.85[EUR][1000 genomes]
rs2027377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2045091	0.84[CEU][hapmap]
rs2305511	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2395989	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs36004574	0.85[EUR][1000 genomes]
rs3812476	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4733569	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4733573	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4733772	0.85[EUR][1000 genomes]
rs4733782	0.92[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4733783	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4733788	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57198371	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62524643	0.83[ASN][1000 genomes]
rs62524644	0.83[ASN][1000 genomes]
rs62524649	0.83[ASN][1000 genomes]
rs62525884	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62525885	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62525888	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62525889	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62525921	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62525922	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62525927	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62525928	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6415511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6415512	1.00[YRI][hapmap]
rs6415513	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6415514	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6415517	0.94[CEU][hapmap];0.95[CHB][hapmap];0.80[AFR][1000 genomes]
rs6470813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6470814	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6991714	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6996106	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs6996469	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6999216	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7006336	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs716077	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes]
rs72722366	0.84[EUR][1000 genomes]
rs72722371	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72724420	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72724433	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7462286	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs754021	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9297806	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv465810	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv612234	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv831461	chr8:131159819-131302900	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv870148	chr8:131206342-131373989	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131250800-131289200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr8:131257400-131281600	Weak transcription	Gastric	stomach
3	chr8:131258000-131275400	Weak transcription	Stomach Mucosa	stomach
4	chr8:131261400-131275800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr8:131261600-131275400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:131261800-131276000	Weak transcription	K562	blood
7	chr8:131262200-131276200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr8:131263000-131275800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr8:131263000-131276000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr8:131264400-131276200	Weak transcription	Fetal Heart	heart
11	chr8:131267600-131275800	Weak transcription	Primary T cells from cord blood	blood
12	chr8:131268400-131276000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr8:131268400-131281600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:131268400-131291400	Weak transcription	Fetal Intestine Large	intestine
15	chr8:131268600-131275400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr8:131268600-131275600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr8:131268600-131275800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr8:131268800-131281000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr8:131268800-131281400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr8:131269400-131280000	Weak transcription	Fetal Lung	lung
21	chr8:131270600-131275400	Weak transcription	Spleen	Spleen
22	chr8:131270600-131283600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr8:131270600-131291200	Weak transcription	Liver	Liver
24	chr8:131270800-131275400	Weak transcription	Small Intestine	intestine
25	chr8:131270800-131278800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr8:131271000-131275400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr8:131271000-131276200	Weak transcription	Right Ventricle	heart
28	chr8:131271000-131277000	Enhancers	HSMM	muscle
29	chr8:131271000-131279000	Enhancers	HMEC	breast
30	chr8:131271200-131276000	Weak transcription	Psoas Muscle	Psoas
31	chr8:131271200-131278600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr8:131271400-131275400	Weak transcription	Brain Anterior Caudate	brain
33	chr8:131271400-131278600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr8:131271800-131275400	Weak transcription	Aorta	Aorta
35	chr8:131271800-131275400	Weak transcription	Left Ventricle	heart
36	chr8:131271800-131275800	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr8:131271800-131276000	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr8:131271800-131276200	Weak transcription	Brain Angular Gyrus	brain
39	chr8:131271800-131276200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr8:131272000-131275800	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr8:131272000-131276000	Weak transcription	Fetal Kidney	kidney
42	chr8:131272000-131276200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr8:131272200-131275600	Weak transcription	Brain Hippocampus Middle	brain
44	chr8:131272200-131277400	Weak transcription	GM12878-XiMat	blood
45	chr8:131272200-131286600	Weak transcription	Primary B cells from cord blood	blood
46	chr8:131272400-131281400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr8:131272600-131275400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr8:131272600-131275800	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr8:131272600-131276000	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr8:131272800-131276400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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