Variant report

Variant	rs4733788
Chromosome Location	chr8:131337036-131337037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:131325774..131327833-chr8:131336321..131339218,2	K562	blood:
2	chr8:131335598..131338253-chr8:131338429..131341406,2	MCF-7	breast:
3	chr8:131336690..131338851-chr8:131341065..131343497,2	K562	blood:
4	chr8:131328562..131331530-chr8:131335260..131337875,2	K562	blood:
5	chr8:131335044..131338190-chr8:131340619..131343497,3	K562	blood:
6	chr8:131318340..131321278-chr8:131336360..131338722,2	MCF-7	breast:
7	chr8:131196822..131199241-chr8:131335887..131338128,2	K562	blood:
8	chr8:131336874..131339691-chr8:131343974..131346537,3	K562	blood:

No data

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10091130	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10109236	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10505548	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10505549	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.87[LWK][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10956513	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs10956515	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];0.88[TSI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10956517	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10956525	0.82[ASW][hapmap];0.82[CEU][hapmap];0.93[GIH][hapmap]
rs11779014	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11781752	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs11786705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12541083	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12547397	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12675390	1.00[CHB][hapmap];0.86[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap]
rs12676836	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes]
rs12679283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12681954	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs12681955	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes]
rs1417007	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1469286	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes]
rs1549455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16893271	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16904212	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs16904219	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs16904223	0.83[EUR][1000 genomes]
rs16904231	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16904239	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16904241	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16904242	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16904249	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1974313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2027377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2305511	0.84[ASW][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.85[TSI][hapmap]
rs4733573	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4733782	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4733783	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57198371	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62525885	0.87[AFR][1000 genomes]
rs62525888	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62525889	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62525921	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62525922	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62525927	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62525928	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6415511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6415513	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6415514	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6415517	1.00[ASW][hapmap];0.94[CEU][hapmap];0.95[CHB][hapmap];0.93[GIH][hapmap];0.82[MEX][hapmap];0.81[EUR][1000 genomes]
rs6470813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6470814	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6991714	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs6996469	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6999216	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7006336	0.80[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs72722371	0.83[AFR][1000 genomes]
rs72724420	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72724433	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7462286	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs754021	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9297806	0.82[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv870148	chr8:131206342-131373989	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131315600-131342000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr8:131315600-131353400	Weak transcription	Dnd41	blood
3	chr8:131322000-131338200	Weak transcription	Esophagus	oesophagus
4	chr8:131323400-131345600	Weak transcription	Fetal Intestine Small	intestine
5	chr8:131324800-131344600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr8:131326800-131347800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr8:131327000-131345600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr8:131327200-131337800	Weak transcription	Fetal Kidney	kidney
9	chr8:131330200-131353400	Weak transcription	Aorta	Aorta
10	chr8:131330800-131338400	Weak transcription	Placenta	Placenta
11	chr8:131331000-131342400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr8:131331200-131340400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr8:131331800-131339600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr8:131331800-131340000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr8:131332000-131338400	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr8:131332000-131338600	Weak transcription	Primary B cells from cord blood	blood
17	chr8:131332000-131340800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr8:131332600-131341200	Weak transcription	Fetal Stomach	stomach
19	chr8:131332600-131341400	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr8:131332600-131342600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr8:131332600-131344800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:131332800-131337200	Enhancers	Adipose Nuclei	Adipose
23	chr8:131332800-131339200	Weak transcription	Lung	lung
24	chr8:131332800-131339400	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr8:131332800-131339800	Weak transcription	GM12878-XiMat	blood
26	chr8:131333000-131339200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr8:131333200-131339600	Enhancers	Brain Anterior Caudate	brain
28	chr8:131333200-131344200	Enhancers	NHDF-Ad	bronchial
29	chr8:131333400-131343000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr8:131333600-131337200	Enhancers	Pancreatic Islets	Pancreatic Islet
31	chr8:131333600-131337400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr8:131333600-131338200	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr8:131333600-131338400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr8:131333800-131338400	Weak transcription	Ovary	ovary
35	chr8:131333800-131339200	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr8:131334000-131337600	Weak transcription	HepG2	liver
37	chr8:131334000-131338400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr8:131334200-131337400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
39	chr8:131334200-131337600	Enhancers	Brain Angular Gyrus	brain
40	chr8:131334200-131338400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr8:131334600-131339800	Enhancers	Fetal Thymus	thymus
42	chr8:131334800-131337200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr8:131334800-131339400	Enhancers	Stomach Smooth Muscle	stomach
44	chr8:131334800-131346600	Weak transcription	Primary B cells from peripheral blood	blood
45	chr8:131335000-131337200	Enhancers	Psoas Muscle	Psoas
46	chr8:131335000-131337200	Enhancers	Right Atrium	heart
47	chr8:131335000-131337600	Enhancers	Left Ventricle	heart
48	chr8:131335000-131338000	Enhancers	K562	blood
49	chr8:131335000-131338400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr8:131335000-131338800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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