Variant report

Variant	rs4733782
Chromosome Location	chr8:131304389-131304390
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:131303917..131305771-chr8:131379241..131381202,2	MCF-7	breast:
2	chr8:131302789..131304679-chr8:131308821..131310748,2	MCF-7	breast:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10091130	0.92[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10109236	0.96[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10505548	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10505549	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10956513	0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10956515	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10956517	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11779014	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11781752	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs11786705	0.92[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12541083	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12542411	0.91[AFR][1000 genomes]
rs12545910	0.85[EUR][1000 genomes]
rs12547397	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12547540	0.85[EUR][1000 genomes]
rs12675390	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs12675543	0.91[AFR][1000 genomes]
rs12676836	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12679283	0.92[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12681954	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12681955	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1417007	0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1469286	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1549455	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16893271	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16904204	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs16904208	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs16904212	0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs16904219	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs16904223	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16904231	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16904239	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16904241	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16904242	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16904249	0.92[CHB][hapmap];0.95[JPT][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1960661	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1974313	0.92[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2027377	0.92[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2305511	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs36004574	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs3812476	0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[AFR][1000 genomes]
rs4733573	1.00[CHB][hapmap];0.90[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4733771	1.00[AFR][1000 genomes]
rs4733772	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4733783	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4733788	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57198371	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59297824	0.82[AFR][1000 genomes]
rs62524635	0.95[AFR][1000 genomes]
rs62524643	1.00[AFR][1000 genomes]
rs62524649	1.00[AFR][1000 genomes]
rs62525884	0.82[EUR][1000 genomes]
rs62525885	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62525888	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62525889	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62525921	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62525922	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62525927	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62525928	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6415511	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6415513	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6415514	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6415517	0.87[CHB][hapmap];0.80[JPT][hapmap]
rs6470813	0.92[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6470814	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6991714	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs6996469	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6999216	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7006336	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs716077	0.92[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs72722366	0.83[EUR][1000 genomes]
rs72722371	0.95[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72724420	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72724433	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7462286	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs754021	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9297806	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv465810	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv612234	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv870148	chr8:131206342-131373989	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131282400-131314800	Weak transcription	Gastric	stomach
2	chr8:131290200-131305400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:131290200-131305600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:131291800-131305400	Weak transcription	Lung	lung
5	chr8:131292800-131304800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr8:131297200-131304600	Weak transcription	Spleen	Spleen
7	chr8:131297200-131308200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:131297400-131304400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:131297400-131304400	Weak transcription	Brain Germinal Matrix	brain
10	chr8:131297400-131304600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr8:131297400-131305200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr8:131297400-131305400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr8:131297400-131305600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr8:131297400-131305800	Weak transcription	Small Intestine	intestine
15	chr8:131297400-131306600	Weak transcription	Fetal Kidney	kidney
16	chr8:131297600-131304800	Weak transcription	Primary B cells from cord blood	blood
17	chr8:131297600-131311400	Weak transcription	Fetal Lung	lung
18	chr8:131298200-131305800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr8:131298600-131305400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr8:131299000-131304400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr8:131299200-131305200	Weak transcription	Thymus	Thymus
22	chr8:131299400-131305200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr8:131299400-131305200	Weak transcription	Fetal Thymus	thymus
24	chr8:131299400-131305400	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr8:131299800-131305400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr8:131299800-131305400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr8:131299800-131305400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr8:131300000-131304400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr8:131300000-131304400	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr8:131300000-131305000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr8:131300200-131304400	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr8:131300200-131304800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr8:131300400-131304600	Weak transcription	Brain Cingulate Gyrus	brain
34	chr8:131300400-131304800	Weak transcription	HMEC	breast
35	chr8:131300400-131305200	Weak transcription	HepG2	liver
36	chr8:131300400-131305400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr8:131300400-131305400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr8:131300400-131305600	Weak transcription	NHEK	skin
39	chr8:131300400-131314800	Weak transcription	Fetal Muscle Trunk	muscle
40	chr8:131300600-131304400	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr8:131300600-131304600	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr8:131300800-131304400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr8:131300800-131304400	Weak transcription	Brain Hippocampus Middle	brain
44	chr8:131301000-131304600	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr8:131301000-131304600	Weak transcription	HSMM	muscle
46	chr8:131301000-131305200	Weak transcription	Fetal Intestine Small	intestine
47	chr8:131301000-131305400	Weak transcription	Pancreas	Pancrea
48	chr8:131301000-131308200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr8:131301000-131309600	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr8:131301200-131304400	Weak transcription	HUVEC	blood vessel

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