Variant report

Variant	rs1979602
Chromosome Location	chr11:17283613-17283614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17278678..17282640-chr11:17283313..17286306,4	K562	blood:

Variant related genes	Relation type
ENSG00000070081	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11603765	1.00[CHB][hapmap]
rs11604470	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs11604561	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11605497	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606773	0.98[EUR][1000 genomes]
rs11607918	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11608222	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1544609	1.00[CEU][hapmap]
rs16924899	1.00[CHB][hapmap]
rs16933823	1.00[CHB][hapmap]
rs16933827	1.00[CHB][hapmap]
rs17647408	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2040859	1.00[CHB][hapmap]
rs4148634	1.00[CHB][hapmap]
rs61762011	0.89[EUR][1000 genomes]
rs61879714	0.89[EUR][1000 genomes]
rs61879715	0.88[EUR][1000 genomes]
rs61879721	0.91[EUR][1000 genomes]
rs61879731	0.91[EUR][1000 genomes]
rs61879758	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61881880	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61881884	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61881886	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61881889	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61881916	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72862099	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7342171	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv469762	chr11:17170690-17320691	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv482905	chr11:17170690-17320691	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17278800-17288800	Weak transcription	Placenta	Placenta
2	chr11:17279000-17284600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:17279000-17284600	Weak transcription	NHLF	lung
4	chr11:17279000-17284800	Weak transcription	HMEC	breast
5	chr11:17279200-17284600	Weak transcription	Osteobl	bone
6	chr11:17279800-17284400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:17279800-17285000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:17280000-17285200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:17280000-17285200	Weak transcription	Hela-S3	cervix
10	chr11:17280400-17284600	Weak transcription	A549	lung
11	chr11:17281800-17284800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:17281800-17285200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:17281800-17285200	Weak transcription	K562	blood
14	chr11:17281800-17285200	Weak transcription	NHEK	skin
15	chr11:17282000-17285200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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