Variant report

Variant	rs1979739
Chromosome Location	chr15:33950294-33950295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11072588	0.89[CEU][hapmap];0.84[JPT][hapmap];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11072589	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12101933	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17236392	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17817476	0.89[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28413876	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28522158	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28523420	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28585082	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28595182	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28606024	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28612733	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8030397	0.89[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs953063	0.94[CEU][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33915000-33959400	Weak transcription	Colon Smooth Muscle	Colon
2	chr15:33923200-33955600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr15:33925800-33952600	Weak transcription	Brain Anterior Caudate	brain
4	chr15:33931200-33951400	Weak transcription	Spleen	Spleen
5	chr15:33932800-33956000	Weak transcription	Brain Hippocampus Middle	brain
6	chr15:33933000-33976000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr15:33937000-33955800	Weak transcription	Aorta	Aorta
8	chr15:33939000-33958000	Weak transcription	Fetal Stomach	stomach
9	chr15:33943400-33965600	Weak transcription	Fetal Brain Female	brain
10	chr15:33946400-33959800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr15:33947200-33954000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr15:33947400-33952000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr15:33947400-33954200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:33948000-33957400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr15:33948000-33973400	Weak transcription	Psoas Muscle	Psoas
16	chr15:33948200-33951600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr15:33948200-33960800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr15:33948600-33952400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr15:33949000-33951200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr15:33949600-33950600	Weak transcription	Fetal Muscle Leg	muscle
21	chr15:33950200-33950600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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