Variant report

Variant	rs28612733
Chromosome Location	chr15:33961181-33961182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11072588	0.82[EUR][1000 genomes]
rs11072589	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12101933	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17236392	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17817476	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1979739	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28413876	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28522158	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28523420	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28585082	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28595182	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28606024	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8030397	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs953063	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33933000-33976000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr15:33943400-33965600	Weak transcription	Fetal Brain Female	brain
3	chr15:33948000-33973400	Weak transcription	Psoas Muscle	Psoas
4	chr15:33951800-33974000	Weak transcription	Brain Substantia Nigra	brain
5	chr15:33956000-33965400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr15:33956800-33972400	Weak transcription	Aorta	Aorta
7	chr15:33957600-33972400	Weak transcription	Fetal Muscle Leg	muscle
8	chr15:33957800-33975800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:33957800-33992000	Weak transcription	Brain Anterior Caudate	brain
10	chr15:33958000-33964200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr15:33958200-33972600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr15:33959200-33961800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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