Variant report

Variant	rs8030397
Chromosome Location	chr15:33944311-33944312
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11072588	0.84[JPT][hapmap];0.84[EUR][1000 genomes]
rs11072589	0.94[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12101933	0.94[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17236392	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17817476	0.88[CHB][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1979739	0.89[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28413876	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28522158	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28523420	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28585082	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28595182	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28606024	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28612733	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7168819	0.80[AFR][1000 genomes]
rs953063	0.84[CEU][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33915000-33959400	Weak transcription	Colon Smooth Muscle	Colon
2	chr15:33923200-33955600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr15:33925800-33952600	Weak transcription	Brain Anterior Caudate	brain
4	chr15:33931000-33947000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr15:33931200-33951400	Weak transcription	Spleen	Spleen
6	chr15:33932800-33956000	Weak transcription	Brain Hippocampus Middle	brain
7	chr15:33933000-33976000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:33937000-33955800	Weak transcription	Aorta	Aorta
9	chr15:33939000-33958000	Weak transcription	Fetal Stomach	stomach
10	chr15:33939200-33947000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr15:33941000-33947200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr15:33942200-33945000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr15:33942200-33947000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr15:33943200-33947200	Strong transcription	Stomach Smooth Muscle	stomach
15	chr15:33943400-33965600	Weak transcription	Fetal Brain Female	brain
16	chr15:33943800-33945200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr15:33944200-33947000	Weak transcription	Fetal Muscle Leg	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links