Variant report

Variant	rs1980851
Chromosome Location	chr1:75268971-75268972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1051122	0.87[ASN][1000 genomes]
rs10874122	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10890142	0.87[ASN][1000 genomes]
rs11485298	0.96[ASN][1000 genomes]
rs11485555	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12410060	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1248244	0.94[ASN][1000 genomes]
rs1409785	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1465483	0.86[ASN][1000 genomes]
rs1475396	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1969111	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs277368	0.95[ASN][1000 genomes]
rs277369	0.95[ASN][1000 genomes]
rs277374	0.93[ASN][1000 genomes]
rs277375	0.93[ASN][1000 genomes]
rs277376	0.95[ASN][1000 genomes]
rs277380	0.98[ASN][1000 genomes]
rs277396	0.95[ASN][1000 genomes]
rs277398	0.93[ASN][1000 genomes]
rs277402	0.84[ASN][1000 genomes]
rs2795030	0.95[ASN][1000 genomes]
rs28482086	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28568334	0.94[ASN][1000 genomes]
rs28583318	0.96[ASN][1000 genomes]
rs2881153	0.96[ASN][1000 genomes]
rs28857918	0.94[ASN][1000 genomes]
rs28879157	0.94[ASN][1000 genomes]
rs3806160	0.94[ASN][1000 genomes]
rs3819946	0.81[ASN][1000 genomes]
rs3931020	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs405445	0.95[ASN][1000 genomes]
rs4145871	0.96[ASN][1000 genomes]
rs438014	0.93[ASN][1000 genomes]
rs452242	0.95[ASN][1000 genomes]
rs455032	0.87[ASN][1000 genomes]
rs525487	0.95[ASN][1000 genomes]
rs7522428	0.87[ASN][1000 genomes]
rs968358	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011745	chr1:74730942-75477618	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv535003	chr1:74730942-75477618	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv1851105	chr1:75152186-75302921	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv871743	chr1:75235082-75714554	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs1980851	CRYZ	cis	lung	GTEx
rs1980851	CRYZ	cis	multi-tissue	Pritchard
rs1980851	CRYZ	Cis_1M	lymphoblastoid	RTeQTL
rs1980851	CRYZ	cis	Adipose Subcutaneous	GTEx
rs1980851	CRYZ	cis	Whole Blood	GTEx
rs1980851	CRYZ	cis	Nerve Tibial	GTEx
rs1980851	TYW3	Cis_1M	lymphoblastoid	RTeQTL
rs1980851	CRYZ	cis	Esophagus Mucosa	GTEx
rs1980851	CRYZ	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75268600-75269400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links