Variant report

Variant	rs1983351
Chromosome Location	chr15:92548594-92548595
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92542461..92544269-chr15:92546881..92548703,2	K562	blood:
2	chr15:92538879..92541331-chr15:92548247..92550624,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10468145	0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12593984	0.94[JPT][hapmap]
rs12903900	0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12904266	0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs12905905	0.83[JPT][hapmap]
rs12905912	0.83[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs12906289	0.84[JPT][hapmap]
rs12908689	0.92[ASN][1000 genomes]
rs12912272	0.83[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs12912997	0.83[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs62011574	0.91[ASN][1000 genomes]
rs6496886	0.97[ASN][1000 genomes]
rs7178378	0.94[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs7495052	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8040010	0.84[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv904498	chr15:92545284-92558234	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92498200-92555000	Weak transcription	Gastric	stomach
2	chr15:92527400-92551400	Weak transcription	Aorta	Aorta
3	chr15:92536400-92548600	Weak transcription	Esophagus	oesophagus
4	chr15:92538200-92554800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr15:92543000-92552400	Weak transcription	Pancreas	Pancrea
6	chr15:92543600-92550800	Enhancers	Brain Substantia Nigra	brain
7	chr15:92544200-92554800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr15:92544400-92554800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr15:92544600-92548600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr15:92544800-92548600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:92544800-92548600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:92544800-92548600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:92544800-92551200	Weak transcription	Ovary	ovary
14	chr15:92544800-92552400	Weak transcription	Spleen	Spleen
15	chr15:92544800-92554200	Weak transcription	Fetal Brain Female	brain
16	chr15:92544800-92554800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr15:92545400-92554800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr15:92545600-92552400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:92546400-92551800	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr15:92546800-92551000	Enhancers	Brain Hippocampus Middle	brain
21	chr15:92547000-92553400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr15:92547200-92549000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr15:92547200-92552000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr15:92547400-92549200	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr15:92547400-92549400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr15:92547400-92552400	Weak transcription	Psoas Muscle	Psoas
27	chr15:92547400-92553000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr15:92547400-92553000	Weak transcription	Right Ventricle	heart
29	chr15:92547600-92548600	Weak transcription	Right Atrium	heart
30	chr15:92547600-92550200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr15:92547600-92551400	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr15:92547600-92552400	Weak transcription	Lung	lung
33	chr15:92547600-92552600	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr15:92547600-92555000	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr15:92547800-92549400	Weak transcription	Brain Angular Gyrus	brain
36	chr15:92548000-92548600	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr15:92548000-92549400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr15:92548000-92549800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr15:92548200-92549200	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr15:92548200-92549200	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr15:92548200-92549200	Weak transcription	Brain Cingulate Gyrus	brain
42	chr15:92548200-92549400	Enhancers	Left Ventricle	heart
43	chr15:92548200-92549600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr15:92548200-92549600	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr15:92548200-92550200	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr15:92548200-92554200	Weak transcription	Primary T cells from cord blood	blood
47	chr15:92548400-92548600	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr15:92548400-92548800	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr15:92548400-92549400	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr15:92548400-92549400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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