Variant report

Variant	rs62011574
Chromosome Location	chr15:92556755-92556756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10468145	0.91[ASN][1000 genomes]
rs12593984	0.81[ASN][1000 genomes]
rs12899673	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12903900	0.91[ASN][1000 genomes]
rs12904266	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12905912	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12908689	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12912272	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12912997	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1983351	0.91[ASN][1000 genomes]
rs6496886	0.92[ASN][1000 genomes]
rs7178378	0.90[ASN][1000 genomes]
rs7495052	0.84[ASN][1000 genomes]
rs8040010	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv904498	chr15:92545284-92558234	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92550800-92562600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:92551200-92557400	Enhancers	Ovary	ovary
3	chr15:92552200-92559000	Enhancers	Left Ventricle	heart
4	chr15:92552800-92561800	Weak transcription	Psoas Muscle	Psoas
5	chr15:92554000-92556800	Enhancers	Pancreas	Pancrea
6	chr15:92554000-92556800	Enhancers	Right Ventricle	heart
7	chr15:92554000-92559200	Enhancers	Brain Substantia Nigra	brain
8	chr15:92554200-92556800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:92554200-92559200	Enhancers	Brain Angular Gyrus	brain
10	chr15:92554200-92566200	Enhancers	Right Atrium	heart
11	chr15:92554800-92556800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:92554800-92556800	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr15:92554800-92557200	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr15:92554800-92557600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:92555400-92557400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr15:92555400-92564200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr15:92555600-92557000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr15:92555600-92557200	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr15:92555600-92557400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr15:92555600-92557400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr15:92555600-92557400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr15:92555600-92558400	Enhancers	Brain Anterior Caudate	brain
23	chr15:92555600-92563200	Enhancers	Brain Cingulate Gyrus	brain
24	chr15:92555600-92563200	Enhancers	Brain Hippocampus Middle	brain
25	chr15:92555600-92564000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr15:92555600-92565600	Weak transcription	Gastric	stomach
27	chr15:92555600-92570600	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr15:92555600-92576200	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr15:92555800-92557000	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr15:92555800-92557200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr15:92555800-92557200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr15:92555800-92557400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr15:92555800-92557400	Weak transcription	Esophagus	oesophagus
34	chr15:92555800-92557600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr15:92555800-92558600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
36	chr15:92555800-92559000	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr15:92555800-92560600	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr15:92555800-92564200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr15:92556000-92557000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr15:92556000-92557400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr15:92556000-92561400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr15:92556000-92564200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr15:92556400-92556800	Weak transcription	Primary hematopoietic stem cells	blood
44	chr15:92556400-92557400	Weak transcription	Fetal Heart	heart
45	chr15:92556400-92557400	Weak transcription	HMEC	breast
46	chr15:92556400-92557600	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr15:92556600-92556800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr15:92556600-92557000	Weak transcription	Aorta	Aorta
49	chr15:92556600-92557400	Weak transcription	Lung	lung
50	chr15:92556600-92558000	Weak transcription	Spleen	Spleen

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