Variant report

Variant	rs12904266
Chromosome Location	chr15:92558662-92558663
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92552941..92555827-chr15:92557594..92560539,2	MCF-7	breast:
2	chr15:92552040..92555185-chr15:92557169..92559357,3	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10468145	0.94[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs12593984	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs12899673	0.91[CEU][hapmap]
rs12903900	0.94[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs12905838	0.82[CEU][hapmap]
rs12905912	0.90[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12908689	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12912272	0.90[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12912997	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12913189	0.83[JPT][hapmap]
rs1983351	0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs62011574	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6496886	0.90[ASN][1000 genomes]
rs7178378	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7181178	0.83[JPT][hapmap]
rs7495052	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs8040010	0.91[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92550800-92562600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:92552200-92559000	Enhancers	Left Ventricle	heart
3	chr15:92552800-92561800	Weak transcription	Psoas Muscle	Psoas
4	chr15:92554000-92559200	Enhancers	Brain Substantia Nigra	brain
5	chr15:92554200-92559200	Enhancers	Brain Angular Gyrus	brain
6	chr15:92554200-92566200	Enhancers	Right Atrium	heart
7	chr15:92555400-92564200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr15:92555600-92563200	Enhancers	Brain Cingulate Gyrus	brain
9	chr15:92555600-92563200	Enhancers	Brain Hippocampus Middle	brain
10	chr15:92555600-92564000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr15:92555600-92565600	Weak transcription	Gastric	stomach
12	chr15:92555600-92570600	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr15:92555600-92576200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr15:92555800-92559000	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr15:92555800-92560600	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr15:92555800-92564200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr15:92556000-92561400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr15:92556000-92564200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr15:92556800-92565000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr15:92556800-92565200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr15:92557000-92559000	Enhancers	Aorta	Aorta
22	chr15:92557000-92562800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:92557400-92561000	Enhancers	Fetal Heart	heart
24	chr15:92557600-92561000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr15:92557800-92567000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr15:92558000-92559200	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr15:92558000-92559200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:92558000-92559200	Enhancers	Right Ventricle	heart
29	chr15:92558000-92561600	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr15:92558000-92562600	Enhancers	Spleen	Spleen
31	chr15:92558000-92571200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr15:92558200-92561000	Weak transcription	Esophagus	oesophagus
33	chr15:92558200-92561000	Weak transcription	Lung	lung
34	chr15:92558400-92561000	Weak transcription	Ovary	ovary
35	chr15:92558400-92561800	Weak transcription	Brain Anterior Caudate	brain
36	chr15:92558600-92559400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr15:92558600-92568600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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