Variant report

Variant	rs1983773
Chromosome Location	chr6:144481767-144481768
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144479875..144482204-chr6:144493372..144495029,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11155347	0.89[CEU][hapmap]
rs12175856	1.00[YRI][hapmap]
rs12207102	1.00[YRI][hapmap]
rs1322452	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs2328564	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4895634	0.85[CEU][hapmap]
rs4896701	1.00[ASW][hapmap];0.96[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.95[MKK][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4896703	1.00[ASW][hapmap];0.96[CEU][hapmap];0.83[CHB][hapmap];0.97[CHD][hapmap];0.82[GIH][hapmap];1.00[LWK][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6913780	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs6913844	0.96[CEU][hapmap];0.83[CHB][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6922834	0.96[CEU][hapmap];0.94[CHB][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6939189	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs6939320	0.86[EUR][1000 genomes]
rs6940484	0.96[CEU][hapmap];0.89[GIH][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs7756004	0.89[CEU][hapmap]
rs7764017	0.96[CEU][hapmap];0.94[CHB][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7764327	0.89[CEU][hapmap]
rs7764750	0.96[CEU][hapmap];0.88[CHB][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9390157	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024333	chr6:144468065-144502824	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1983773	NMBR	cis	parietal	SCAN

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144473200-144482000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr6:144473400-144513800	Weak transcription	Primary T cells from cord blood	blood
3	chr6:144473600-144507800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:144474200-144499400	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr6:144475000-144500600	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr6:144476600-144493600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:144476800-144500600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:144477400-144482000	Enhancers	Fetal Lung	lung
9	chr6:144478000-144483200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr6:144478800-144490000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr6:144479000-144490200	Weak transcription	Spleen	Spleen
12	chr6:144479000-144500600	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr6:144479000-144511800	Weak transcription	Psoas Muscle	Psoas
14	chr6:144479600-144482800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:144479600-144490000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr6:144479800-144482600	Enhancers	Primary B cells from cord blood	blood
17	chr6:144479800-144493200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:144480200-144483200	Strong transcription	GM12878-XiMat	blood
19	chr6:144480200-144489200	Weak transcription	Placenta	Placenta
20	chr6:144480200-144508200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr6:144480400-144481800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr6:144480400-144482000	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr6:144480800-144482000	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr6:144480800-144483800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:144481000-144481800	Enhancers	HUVEC	blood vessel
26	chr6:144481000-144507800	Weak transcription	Left Ventricle	heart
27	chr6:144481200-144483200	Weak transcription	Adipose Nuclei	Adipose
28	chr6:144481200-144489800	Weak transcription	Lung	lung
29	chr6:144481200-144496800	Weak transcription	Fetal Muscle Leg	muscle
30	chr6:144481200-144507800	Weak transcription	Right Ventricle	heart
31	chr6:144481400-144482200	Enhancers	Fetal Heart	heart
32	chr6:144481600-144482000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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