Variant report

Variant	rs6913780
Chromosome Location	chr6:144504544-144504545
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144502971..144505741-chr6:144509971..144512409,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11155347	0.82[CEU][hapmap]
rs1322452	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs1983773	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs2328564	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs3734227	0.81[CEU][hapmap]
rs4895634	0.88[CEU][hapmap]
rs4896701	0.92[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4896703	0.92[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6913844	0.92[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6922834	0.92[CEU][hapmap];0.80[CHB][hapmap];0.89[EUR][1000 genomes]
rs6939189	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6939320	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6940484	0.92[CEU][hapmap];0.95[EUR][1000 genomes]
rs7756004	0.84[CEU][hapmap]
rs7764017	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7764327	0.84[CEU][hapmap]
rs7764750	0.93[CEU][hapmap];0.84[CHB][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067917	chr6:144498026-144517214	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144473400-144513800	Weak transcription	Primary T cells from cord blood	blood
2	chr6:144473600-144507800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:144479000-144511800	Weak transcription	Psoas Muscle	Psoas
4	chr6:144480200-144508200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:144481000-144507800	Weak transcription	Left Ventricle	heart
6	chr6:144481200-144507800	Weak transcription	Right Ventricle	heart
7	chr6:144487000-144507800	Weak transcription	Esophagus	oesophagus
8	chr6:144488800-144510000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:144489400-144508200	Weak transcription	Liver	Liver
10	chr6:144493600-144507600	Weak transcription	Placenta	Placenta
11	chr6:144497400-144508600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:144499600-144511000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:144499800-144507800	Weak transcription	Adipose Nuclei	Adipose
14	chr6:144500800-144508000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:144500800-144518800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr6:144501000-144505400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:144501000-144507600	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr6:144501000-144507800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:144501000-144507800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr6:144501000-144507800	Weak transcription	Lung	lung
21	chr6:144501200-144507800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:144501200-144507800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr6:144501200-144508400	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr6:144501200-144520000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr6:144501400-144505600	Weak transcription	Fetal Heart	heart
26	chr6:144501400-144507800	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr6:144501400-144512400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr6:144501600-144507800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr6:144501600-144508200	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr6:144501600-144519400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr6:144502000-144507600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr6:144502000-144507800	Weak transcription	Primary B cells from peripheral blood	blood
33	chr6:144502000-144507800	Weak transcription	Primary hematopoietic stem cells	blood
34	chr6:144502600-144509600	Weak transcription	Primary B cells from cord blood	blood
35	chr6:144503600-144504600	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr6:144503600-144507600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr6:144503600-144507800	Weak transcription	Gastric	stomach
38	chr6:144504000-144507600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr6:144504000-144507800	Weak transcription	Spleen	Spleen
40	chr6:144504000-144511800	Weak transcription	Right Atrium	heart
41	chr6:144504200-144504600	Enhancers	GM12878-XiMat	blood
42	chr6:144504200-144505400	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr6:144504200-144507000	Genic enhancers	Monocytes-CD14+_RO01746	blood

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