Variant report

Variant	rs4896703
Chromosome Location	chr6:144497577-144497578
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11155347	0.92[CEU][hapmap]
rs1322452	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs1983773	1.00[ASW][hapmap];0.96[CEU][hapmap];0.83[CHB][hapmap];0.97[CHD][hapmap];0.82[GIH][hapmap];1.00[LWK][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2328564	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.80[JPT][hapmap];1.00[LWK][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4895634	0.88[CEU][hapmap]
rs4896701	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];0.92[MEX][hapmap];0.95[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6913780	0.92[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6913844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922834	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6939189	0.92[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6939320	0.89[EUR][1000 genomes]
rs6940484	1.00[CEU][hapmap];0.89[GIH][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs7756004	0.92[CEU][hapmap]
rs7764017	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7764327	0.92[CEU][hapmap]
rs7764750	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024333	chr6:144468065-144502824	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144473400-144513800	Weak transcription	Primary T cells from cord blood	blood
2	chr6:144473600-144507800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:144474200-144499400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr6:144475000-144500600	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr6:144476800-144500600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:144479000-144500600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr6:144479000-144511800	Weak transcription	Psoas Muscle	Psoas
8	chr6:144480200-144508200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:144481000-144507800	Weak transcription	Left Ventricle	heart
10	chr6:144481200-144507800	Weak transcription	Right Ventricle	heart
11	chr6:144484800-144500600	Weak transcription	Primary B cells from peripheral blood	blood
12	chr6:144485200-144500600	Weak transcription	Primary B cells from cord blood	blood
13	chr6:144487000-144507800	Weak transcription	Esophagus	oesophagus
14	chr6:144488800-144510000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr6:144489400-144508200	Weak transcription	Liver	Liver
16	chr6:144490400-144503400	Weak transcription	Spleen	Spleen
17	chr6:144493400-144498200	Genic enhancers	Monocytes-CD14+_RO01746	blood
18	chr6:144493600-144500800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:144493600-144507600	Weak transcription	Placenta	Placenta
20	chr6:144493800-144500600	Weak transcription	Lung	lung
21	chr6:144494200-144498000	Genic enhancers	Primary monocytes fromperipheralblood	blood
22	chr6:144495000-144500400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:144495200-144499200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:144496000-144499000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr6:144496200-144498000	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr6:144497000-144497800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr6:144497000-144497800	Enhancers	K562	blood
28	chr6:144497200-144497800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:144497200-144497800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:144497200-144498400	Enhancers	Adipose Nuclei	Adipose
31	chr6:144497200-144499400	Weak transcription	GM12878-XiMat	blood
32	chr6:144497200-144499600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr6:144497400-144497600	Active TSS	NHDF-Ad	bronchial
34	chr6:144497400-144498000	Enhancers	Fetal Heart	heart
35	chr6:144497400-144500600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr6:144497400-144508600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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