Variant report

Variant	rs1985366
Chromosome Location	chr2:234824559-234824560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:234361502..234363996-chr2:234822105..234824849,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1003540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10166942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10170399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10187654	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10929309	0.80[ASN][1000 genomes]
rs10929312	0.90[ASN][1000 genomes]
rs10929314	0.91[ASN][1000 genomes]
rs11563063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11563066	0.90[ASN][1000 genomes]
rs11563227	0.90[ASN][1000 genomes]
rs11892538	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12997802	0.90[ASN][1000 genomes]
rs13016127	0.92[ASN][1000 genomes]
rs13016553	0.91[ASN][1000 genomes]
rs1392606	0.90[ASN][1000 genomes]
rs1965629	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2159200	0.91[ASN][1000 genomes]
rs2286430	0.80[ASN][1000 genomes]
rs2286431	0.80[ASN][1000 genomes]
rs2302155	0.80[ASN][1000 genomes]
rs2362290	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2362292	0.83[AFR][1000 genomes]
rs4233636	0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4663983	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4663986	0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6431648	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6738979	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6760630	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs737636	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7567475	0.90[ASN][1000 genomes]
rs758275	0.83[AFR][1000 genomes]
rs758276	0.81[AFR][1000 genomes]
rs7604471	0.90[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs887061	0.90[ASN][1000 genomes]
rs917434	0.80[ASN][1000 genomes]
rs990418	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234823800-234825000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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