Variant report

Variant	rs6760630
Chromosome Location	chr2:234813415-234813416
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:234773117..234776003-chr2:234811783..234814431,2	K562	blood:
2	chr2:234811574..234814322-chr2:234820780..234823625,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1003540	0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10166942	0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10170399	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10187654	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10189040	0.83[CHB][hapmap]
rs10929309	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs10929312	0.89[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs10929314	0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11563060	0.84[CHB][hapmap]
rs11563063	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11563066	0.93[ASN][1000 genomes]
rs11563216	0.83[CHB][hapmap]
rs11563227	0.93[ASN][1000 genomes]
rs11892538	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.93[ASN][1000 genomes]
rs12997802	0.93[ASN][1000 genomes]
rs13016127	0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs13016553	0.94[ASN][1000 genomes]
rs1392606	0.93[ASN][1000 genomes]
rs1965629	0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1985366	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2108809	0.83[CHB][hapmap]
rs2159200	0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2215173	0.84[CHB][hapmap]
rs2286430	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs2286431	0.83[ASN][1000 genomes]
rs2302155	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs2362290	0.94[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4233636	0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs4663983	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4663986	0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs4663988	0.83[CHB][hapmap]
rs6431648	0.89[CHB][hapmap];0.87[ASN][1000 genomes]
rs6709005	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs6738979	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs737636	0.90[CHB][hapmap];0.87[ASN][1000 genomes]
rs7567475	0.89[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs758275	0.83[CHB][hapmap]
rs758276	0.83[CHB][hapmap]
rs758277	0.87[YRI][hapmap]
rs7604471	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs887061	0.89[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs917433	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs917434	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs968402	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs990418	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234812200-234814200	Weak transcription	Stomach Mucosa	stomach

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