Variant report

Variant	rs4663983
Chromosome Location	chr2:234815005-234815006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:234783189..234785802-chr2:234814089..234815780,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1003540	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10166942	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10170399	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10187654	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10189040	0.92[ASW][hapmap];0.95[CEU][hapmap];0.83[CHB][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];1.00[LWK][hapmap];0.87[MKK][hapmap];0.89[TSI][hapmap];0.88[YRI][hapmap]
rs10490012	0.95[CEU][hapmap];0.85[TSI][hapmap]
rs10490014	0.92[ASW][hapmap]
rs10929309	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs10929312	0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs10929314	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10929319	0.84[ASW][hapmap];0.87[MKK][hapmap];0.88[YRI][hapmap]
rs11563060	0.83[CHB][hapmap];0.88[YRI][hapmap]
rs11563063	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11563066	0.91[ASN][1000 genomes]
rs11563216	0.83[CHB][hapmap];0.80[CHD][hapmap];0.85[MKK][hapmap]
rs11563227	0.91[ASN][1000 genomes]
rs11892538	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12997802	0.91[ASN][1000 genomes]
rs13016127	0.90[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13016553	0.91[ASN][1000 genomes]
rs13418652	0.95[CEU][hapmap]
rs1392606	0.91[ASN][1000 genomes]
rs1965629	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1985366	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2108809	0.83[CHB][hapmap];0.80[CHD][hapmap];0.82[GIH][hapmap];0.87[MKK][hapmap];0.88[YRI][hapmap]
rs2159200	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2215173	0.83[CHB][hapmap];0.88[YRI][hapmap]
rs2286430	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs2286431	0.81[ASN][1000 genomes]
rs2302153	0.89[CEU][hapmap]
rs2302155	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs2362290	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2362292	0.83[AFR][1000 genomes]
rs28946911	0.88[YRI][hapmap]
rs4233636	0.95[CEU][hapmap];0.89[CHB][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4663986	0.95[CEU][hapmap];0.89[CHB][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4663988	0.84[ASW][hapmap];0.83[CHB][hapmap];0.80[CHD][hapmap];0.87[MKK][hapmap];0.88[YRI][hapmap]
rs4663990	0.88[YRI][hapmap]
rs6431648	0.92[ASW][hapmap];0.94[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.89[GIH][hapmap];1.00[LWK][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6709005	0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap]
rs6711120	0.84[ASW][hapmap];0.95[CEU][hapmap];0.85[CHD][hapmap];0.87[GIH][hapmap];0.85[LWK][hapmap];0.85[MKK][hapmap];0.89[TSI][hapmap];0.88[YRI][hapmap]
rs6738375	0.88[YRI][hapmap]
rs6738979	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6740118	0.84[ASW][hapmap];0.87[MKK][hapmap];0.88[YRI][hapmap]
rs6760630	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs737636	0.95[CEU][hapmap];0.89[CHB][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7567475	0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs758275	0.92[ASW][hapmap];0.95[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];1.00[LWK][hapmap];0.87[MKK][hapmap];0.89[TSI][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes]
rs758276	0.92[ASW][hapmap];0.95[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];1.00[LWK][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes]
rs7604471	0.95[CEU][hapmap];0.89[CHB][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs887061	0.87[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs917433	0.82[JPT][hapmap]
rs917434	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs917435	0.88[YRI][hapmap]
rs9646720	0.81[TSI][hapmap]
rs968402	0.87[CHD][hapmap];1.00[JPT][hapmap]
rs990418	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234814200-234815200	Enhancers	Stomach Mucosa	stomach
2	chr2:234814800-234815200	Bivalent Enhancer	Duodenum Mucosa	Duodenum
3	chr2:234815000-234815200	Enhancers	Gastric	stomach

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