Variant report
| Variant | rs198965 |
|---|---|
| Chromosome Location | chr19:51410398-51410399 |
| allele | A/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000261341 | Chromatin interaction |
| ENSG00000197588 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs10403329 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs10406287 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs10406403 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs10406521 | 1.00[ASN][1000 genomes] |
| rs10406640 | 1.00[CHB][hapmap] |
| rs10406695 | 1.00[ASN][1000 genomes] |
| rs10406721 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs10406908 | 1.00[ASN][1000 genomes] |
| rs10414120 | 1.00[ASN][1000 genomes] |
| rs10415064 | 1.00[CHB][hapmap] |
| rs10415472 | 1.00[ASN][1000 genomes] |
| rs10417605 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs10420039 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs12104176 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs12104266 | 1.00[ASN][1000 genomes] |
| rs12104267 | 1.00[ASN][1000 genomes] |
| rs12104311 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs12104424 | 1.00[ASN][1000 genomes] |
| rs12104432 | 1.00[ASN][1000 genomes] |
| rs12104433 | 1.00[ASN][1000 genomes] |
| rs3212842 | 1.00[ASN][1000 genomes] |
| rs3212845 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs3212849 | 1.00[ASN][1000 genomes] |
| rs3212850 | 1.00[ASN][1000 genomes] |
| rs62114140 | 1.00[ASN][1000 genomes] |
| rs7253072 | 1.00[ASN][1000 genomes] |
| rs7253169 | 1.00[ASN][1000 genomes] |
| rs73052460 | 1.00[AFR][1000 genomes] |
| rs73586873 | 1.00[ASN][1000 genomes] |
| rs73586877 | 1.00[ASN][1000 genomes] |
| rs73586878 | 1.00[ASN][1000 genomes] |
| rs73586879 | 1.00[ASN][1000 genomes] |
| rs73591297 | 1.00[ASN][1000 genomes] |
| rs73591300 | 1.00[ASN][1000 genomes] |
| rs73591302 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1060760 | chr19:50883425-51463712 | ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 99 gene(s) | inside rSNPs | diseases |
| 2 | nsv1058177 | chr19:50984774-51463712 | Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 84 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr19:51409600-51412600 | Weak transcription | GM12878-XiMat | blood |
| 2 | chr19:51410200-51410400 | Enhancers | H1 Cell Line | embryonic stem cell |
| 3 | chr19:51410200-51410400 | Enhancers | ES-UCSF4 Cell Line | embryonic stem cell |
