Variant report

Variant	rs7253072
Chromosome Location	chr19:51574594-51574595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:51571883..51577686-chr19:51593894..51597603,10	MCF-7	breast:
2	chr19:51574188..51575929-chr19:51577525..51579949,2	MCF-7	breast:
3	chr19:51527498..51530009-chr19:51572818..51575532,3	MCF-7	breast:
4	chr19:51535511..51537089-chr19:51573976..51575477,2	K562	blood:
5	chr19:51574167..51574904-chr19:51596237..51596983,4	MCF-7	breast:
6	chr19:51574473..51576277-chr19:51596548..51598484,2	MCF-7	breast:
7	chr19:51572582..51577335-chr19:51583867..51587777,5	MCF-7	breast:
8	chr19:51472215..51472723-chr19:51573940..51574763,2	MCF-7	breast:
9	chr19:51574263..51576196-chr19:51824067..51826826,2	K562	blood:
10	chr19:51569153..51571193-chr19:51574240..51576462,2	MCF-7	breast:
11	chr19:51547379..51548022-chr19:51574046..51574733,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1710378	1.00[ASN][1000 genomes]
rs198965	1.00[ASN][1000 genomes]
rs62114140	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7253169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8104538	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34104	chr19:51566170-51641675	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv520705	chr19:51574038-51575424	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51573200-51574800	Enhancers	HMEC	breast
2	chr19:51573400-51574600	Enhancers	K562	blood
3	chr19:51573600-51574600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr19:51573600-51574600	Enhancers	NHEK	skin
5	chr19:51573600-51574800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr19:51573600-51574800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr19:51573800-51574800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr19:51574200-51582600	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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