Variant report

Variant	rs62114140
Chromosome Location	chr19:51575009-51575010
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:51571883..51577686-chr19:51593894..51597603,10	MCF-7	breast:
2	chr19:51574188..51575929-chr19:51577525..51579949,2	MCF-7	breast:
3	chr19:51527498..51530009-chr19:51572818..51575532,3	MCF-7	breast:
4	chr19:51535511..51537089-chr19:51573976..51575477,2	K562	blood:
5	chr19:51574473..51576277-chr19:51596548..51598484,2	MCF-7	breast:
6	chr19:51547984..51550695-chr19:51574702..51576644,2	MCF-7	breast:
7	chr19:51574629..51577563-chr19:51588305..51590933,2	MCF-7	breast:
8	chr19:51572582..51577335-chr19:51583867..51587777,5	MCF-7	breast:
9	chr19:51574263..51576196-chr19:51824067..51826826,2	K562	blood:
10	chr19:51569153..51571193-chr19:51574240..51576462,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1710378	1.00[ASN][1000 genomes]
rs198965	1.00[ASN][1000 genomes]
rs7253072	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7253169	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34104	chr19:51566170-51641675	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv520705	chr19:51574038-51575424	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51574200-51582600	Weak transcription	Pancreas	Pancrea
2	chr19:51574800-51579200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr19:51574800-51579800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links