Variant report

Variant rs1989839
Chromosome Location chr3:50378946-50378947
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:106 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:50373800-50379200 Flanking Active TSS Primary hematopoietic stem cells blood
2 chr3:50374200-50379000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
3 chr3:50375000-50379600 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
4 chr3:50375200-50379000 Flanking Active TSS Primary T cells fromperipheralblood blood
5 chr3:50375200-50379000 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
6 chr3:50375200-50379200 Flanking Active TSS Primary B cells from cord blood blood
7 chr3:50375200-50379200 Flanking Active TSS Primary T helper cells fromperipheralblood blood
8 chr3:50375400-50379400 Flanking Active TSS Primary neutrophils fromperipheralblood blood
9 chr3:50376000-50380200 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
10 chr3:50377000-50379000 Flanking Active TSS Primary T cells from cord blood blood
11 chr3:50377000-50379000 Flanking Active TSS Primary T killer naive cells fromperipheralblood blood
12 chr3:50377000-50379000 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
13 chr3:50377000-50379000 Flanking Active TSS Primary mononuclear cells fromperipheralblood Blood
14 chr3:50377000-50379200 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
15 chr3:50377000-50379200 Flanking Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
16 chr3:50377000-50379200 Flanking Active TSS Adipose Nuclei Adipose
17 chr3:50377000-50379200 Flanking Active TSS Colonic Mucosa Colon
18 chr3:50377000-50380200 Flanking Active TSS Monocytes-CD14+_RO01746 blood
19 chr3:50377200-50379000 Bivalent/Poised TSS ES-I3 Cell Line embryonic stem cell
20 chr3:50377200-50379000 Flanking Active TSS Primary T helper cells PMA-I stimulated --
21 chr3:50377200-50379000 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
22 chr3:50377200-50379000 Active TSS Brain Hippocampus Middle brain
23 chr3:50377400-50379400 Flanking Active TSS Stomach Smooth Muscle stomach
24 chr3:50377600-50379000 Bivalent/Poised TSS iPS-20b Cell Line embryonic stem cell
25 chr3:50377600-50379000 Bivalent/Poised TSS iPS DF 6.9 Cell Line embryonic stem cell
26 chr3:50377600-50379000 Bivalent/Poised TSS Fetal Kidney kidney
27 chr3:50377600-50379000 Active TSS Left Ventricle heart
28 chr3:50377600-50379200 Flanking Active TSS Rectal Mucosa Donor 31 rectum
29 chr3:50377800-50379000 Bivalent/Poised TSS H9 Cell Line embryonic stem cell
30 chr3:50377800-50379200 Flanking Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
31 chr3:50377800-50379200 Active TSS HSMM muscle
32 chr3:50377800-50379400 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
33 chr3:50378000-50379000 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
34 chr3:50378200-50379000 Bivalent Enhancer H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
35 chr3:50378200-50379200 Flanking Bivalent TSS/Enh Fetal Muscle Leg muscle
36 chr3:50378400-50379000 Flanking Active TSS Primary B cells from peripheral blood blood
37 chr3:50378400-50379000 Flanking Bivalent TSS/Enh Fetal Intestine Small intestine
38 chr3:50378400-50379000 Flanking Active TSS Osteobl bone
39 chr3:50378400-50379200 Flanking Active TSS Primary Natural Killer cells fromperipheralblood blood
40 chr3:50378400-50379200 Flanking Active TSS Primary T killer memory cells from peripheral blood blood
41 chr3:50378400-50379200 Flanking Active TSS Duodenum Mucosa Duodenum
42 chr3:50378400-50379200 Flanking Bivalent TSS/Enh Fetal Muscle Trunk muscle
43 chr3:50378400-50379200 Flanking Active TSS Rectal Mucosa Donor 29 rectum
44 chr3:50378400-50379200 Enhancers Sigmoid Colon Sigmoid Colon
45 chr3:50378600-50379000 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
46 chr3:50378600-50379000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
47 chr3:50378600-50379000 Flanking Active TSS Primary T helper memory cells from peripheral blood 1 blood
48 chr3:50378600-50379000 Flanking Active TSS Esophagus oesophagus
49 chr3:50378600-50379000 Flanking Active TSS Gastric stomach
50 chr3:50378600-50379000 Flanking Active TSS Rectal Smooth Muscle rectum

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