Variant report

Variant	rs2236939
Chromosome Location	chr3:50243510-50243511
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3AK20	chr3:50243326-50243765	HepG2	liver:	n/a	n/a
2	POLR2A	chr3:50243264-50243776	HepG2	liver:	n/a	n/a
3	MAX	chr3:50243377-50243782	H1-hESC	embryonic stem cell:	n/a	chr3:50243602-50243612 chr3:50243430-50243440
4	NRF1	chr3:50243455-50243626	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr3:50243275-50243564	HepG2	liver:	n/a	n/a
6	CEBPD	chr3:50243364-50243780	HepG2	liver:	n/a	n/a
7	FOXA1	chr3:50243299-50243824	HepG2	liver:	n/a	n/a
8	CHD2	chr3:50243365-50243541	HepG2	liver:	n/a	n/a
9	FOXA1	chr3:50243474-50243731	T-47D	breast:	n/a	n/a
10	POLR2A	chr3:50242313-50243876	HepG2	liver:	n/a	n/a
11	CTCF	chr3:50243420-50243570	WERI-Rb-1	eye:	n/a	chr3:50243541-50243554
12	MAX	chr3:50243464-50243678	H1-hESC	embryonic stem cell:	n/a	chr3:50243602-50243612
13	POLR2A	chr3:50243279-50243612	HCT-116	colon:	n/a	n/a
14	FOXA1	chr3:50243391-50243861	HepG2	liver:	n/a	n/a
15	MAX	chr3:50242124-50243975	HepG2	liver:	n/a	chr3:50243602-50243612 chr3:50243430-50243440
16	HNF4G	chr3:50243386-50243776	HepG2	liver:	n/a	n/a
17	TAF1	chr3:50243268-50243660	HepG2	liver:	n/a	n/a
18	HA-E2F1	chr3:50243244-50243792	MCF-7	breast:	n/a	chr3:50243539-50243548
19	MAX	chr3:50243196-50243901	HepG2	liver:	n/a	chr3:50243602-50243612 chr3:50243430-50243440
20	POLR2A	chr3:50243231-50244015	HepG2	liver:	n/a	n/a
21	SIN3AK20	chr3:50243332-50243761	HepG2	liver:	n/a	n/a
22	MXI1	chr3:50243303-50243941	HepG2	liver:	n/a	n/a
23	SIN3A	chr3:50242416-50243709	H1-hESC	embryonic stem cell:	n/a	chr3:50243461-50243470 chr3:50242941-50242950
24	YY1	chr3:50243428-50243668	HCT-116	colon:	n/a	chr3:50243542-50243551
25	FOXA1	chr3:50243441-50243708	T-47D	breast:	n/a	n/a
26	POLR2A	chr3:50243271-50243612	HCT-116	colon:	n/a	n/a
27	FOXA1	chr3:50243297-50243829	HepG2	liver:	n/a	n/a
28	POLR2A	chr3:50243261-50243647	HepG2	liver:	n/a	n/a
29	TAF1	chr3:50243268-50243722	HepG2	liver:	n/a	n/a
30	SP4	chr3:50243185-50243789	H1-hESC	embryonic stem cell:	n/a	chr3:50243537-50243553
31	FOXA2	chr3:50243456-50243738	HepG2	liver:	n/a	n/a
32	HNF4A	chr3:50243407-50243728	HepG2	liver:	n/a	n/a
33	POLR2A	chr3:50243238-50243564	ECC-1	luminal epithelium:	n/a	n/a
34	POLR2A	chr3:50241959-50243890	HepG2	liver:	n/a	n/a
35	FOXA1	chr3:50243420-50243851	HepG2	liver:	n/a	n/a
36	MAZ	chr3:50243440-50243806	HepG2	liver:	n/a	chr3:50243602-50243612
37	HEY1	chr3:50243165-50243953	HepG2	liver:	n/a	n/a
38	FOXA1	chr3:50243458-50243660	ECC-1	luminal epithelium:	n/a	n/a
39	MAX	chr3:50242508-50243973	HCT-116	colon:	n/a	chr3:50243602-50243612 chr3:50243430-50243440
40	HEY1	chr3:50242297-50243787	HepG2	liver:	n/a	n/a
41	MAX	chr3:50242671-50243836	ECC-1	luminal epithelium:	n/a	chr3:50243602-50243612 chr3:50243430-50243440
42	SP4	chr3:50243154-50243647	H1-hESC	embryonic stem cell:	n/a	chr3:50243537-50243553
43	HNF4A	chr3:50243416-50243740	HepG2	liver:	n/a	n/a
44	MYBL2	chr3:50243248-50243753	HepG2	liver:	n/a	n/a
45	POLR2A	chr3:50243329-50243630	HepG2	liver:	n/a	n/a
46	HDAC2	chr3:50243368-50243754	HepG2	liver:	n/a	n/a
47	FOXA1	chr3:50243483-50243668	ECC-1	luminal epithelium:	n/a	n/a
48	MAX	chr3:50243192-50243896	ECC-1	luminal epithelium:	n/a	chr3:50243602-50243612 chr3:50243430-50243440
49	TCF12	chr3:50243122-50243714	ECC-1	luminal epithelium:	n/a	n/a
50	MYBL2	chr3:50243314-50243720	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:50226233..50229498-chr3:50242660..50245494,3	K562	blood:
2	chr3:50242260..50244177-chr3:50332568..50334684,2	K562	blood:
3	chr3:50242278..50244597-chr3:50304376..50306670,2	K562	blood:
4	chr3:50243330..50243871-chr6:52024604..52025477,2	MCF-7	breast:

Variant related genes	Relation type
SLC38A3	TF binding region
ENSG00000232352	Chromatin interaction
ENSG00000012171	Chromatin interaction
ENSG00000114349	Chromatin interaction
ENSG00000186792	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10049087	0.81[JPT][hapmap]
rs10510755	0.86[CEU][hapmap];0.95[GIH][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12629572	0.86[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap]
rs12635953	0.85[EUR][1000 genomes]
rs1989839	0.86[CEU][hapmap];0.95[GIH][hapmap];0.94[TSI][hapmap]
rs2013208	0.82[JPT][hapmap]
rs2071802	0.86[CEU][hapmap]
rs2071803	0.86[CEU][hapmap];0.95[GIH][hapmap];0.94[TSI][hapmap]
rs2073498	0.81[CEU][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs2073499	0.81[CEU][hapmap]
rs2097247	0.84[AMR][1000 genomes]
rs2233474	0.81[CEU][hapmap]
rs2239801	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs2240326	0.82[JPT][hapmap]
rs2240327	0.82[JPT][hapmap]
rs2240329	0.82[JPT][hapmap]
rs2301166	0.90[JPT][hapmap]
rs2301639	0.86[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap]
rs2526392	0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2526393	0.92[CEU][hapmap];0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2526394	0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap]
rs2526395	0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2526396	0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2526400	0.81[EUR][1000 genomes]
rs2526748	0.82[JPT][hapmap]
rs2526751	0.82[JPT][hapmap]
rs2526754	0.82[JPT][hapmap]
rs2624836	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2624837	0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2624840	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2624842	0.82[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];0.86[MEX][hapmap]
rs2624847	0.82[JPT][hapmap]
rs2624853	0.82[JPT][hapmap]
rs28365992	0.86[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs2856234	0.90[JPT][hapmap]
rs3755832	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3806708	0.86[CEU][hapmap];1.00[GIH][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs41291724	0.81[AMR][1000 genomes]
rs4141060	0.81[CEU][hapmap]
rs4688755	0.82[JPT][hapmap]
rs57319506	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57462170	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57842657	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58051625	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60247651	0.85[EUR][1000 genomes]
rs6446193	0.82[JPT][hapmap]
rs6446202	0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6776145	0.86[CEU][hapmap];0.95[GIH][hapmap];0.94[TSI][hapmap]
rs739431	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7621352	0.82[JPT][hapmap]
rs7642692	0.92[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9311446	0.82[JPT][hapmap]
rs9814664	0.82[JPT][hapmap]
rs9861216	0.82[JPT][hapmap]
rs9866695	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834690	chr3:50101835-50267584	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv515986	chr3:50104307-50267584	Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1001775	chr3:50129479-50311666	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv876768	chr3:50144951-50267584	Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv523662	chr3:50144951-50584999	Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
6	nsv1013949	chr3:50151712-50339163	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	nsv590250	chr3:50153356-50332697	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
8	nsv876769	chr3:50155468-50408398	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
9	esv1821728	chr3:50156142-50657253	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
10	esv1793751	chr3:50157364-50476363	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
11	esv1828162	chr3:50157364-50506151	Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
12	nsv590251	chr3:50158774-50337422	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
13	nsv470561	chr3:50158774-50584999	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
14	nsv876770	chr3:50158774-50609624	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
15	nsv523560	chr3:50172397-50339163	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
16	nsv460529	chr3:50178011-50324672	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
17	nsv460530	chr3:50178011-50324672	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
18	nsv590252	chr3:50178011-50324672	Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
19	nsv1002916	chr3:50187646-50311666	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
20	nsv536564	chr3:50187646-50311666	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
21	nsv1014256	chr3:50187646-50339163	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
22	nsv536565	chr3:50187646-50339163	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
23	nsv1001993	chr3:50187646-50640808	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
24	nsv590253	chr3:50196418-50337422	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
25	esv2757870	chr3:50198478-50371377	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
26	esv2759148	chr3:50198478-50371377	Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
27	nsv834692	chr3:50198485-50393464	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
28	nsv876771	chr3:50225568-50247824	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
29	nsv590254	chr3:50243510-50388607	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs2236939	TRAIP	cis	parietal	SCAN
rs2236939	CDHR4	cis	lymphoblastoid	seeQTL
rs2236939	NEK4	cis	parietal	SCAN
rs2236939	ARIH2	cis	cerebellum	SCAN
rs2236939	SLC25A20	cis	cerebellum	SCAN

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50242000-50243600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
2	chr3:50242200-50243600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
3	chr3:50242200-50243600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
4	chr3:50242200-50243600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
5	chr3:50242200-50243600	Active TSS	HepG2	liver
6	chr3:50242200-50243800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
7	chr3:50242200-50243800	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr3:50242200-50243800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:50242200-50244400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr3:50242400-50243600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr3:50242400-50243600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
12	chr3:50242400-50243600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
13	chr3:50242400-50243600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
14	chr3:50242400-50243600	Active TSS	Brain Anterior Caudate	brain
15	chr3:50242400-50243600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
16	chr3:50242400-50243600	Active TSS	Pancreas	Pancrea
17	chr3:50242400-50243600	Active TSS	Right Atrium	heart
18	chr3:50242400-50243800	Bivalent Enhancer	Primary B cells from cord blood	blood
19	chr3:50242400-50243800	Active TSS	Brain Angular Gyrus	brain
20	chr3:50242400-50244000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
21	chr3:50242400-50244200	Active TSS	Brain Hippocampus Middle	brain
22	chr3:50242600-50243600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
23	chr3:50242600-50243600	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:50242600-50243600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:50242600-50243600	Active TSS	Liver	Liver
26	chr3:50242600-50243600	Active TSS	Brain Cingulate Gyrus	brain
27	chr3:50242600-50243600	Active TSS	Brain Substantia Nigra	brain
28	chr3:50242600-50243600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
29	chr3:50242600-50243600	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr3:50242600-50243800	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr3:50242600-50243800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr3:50242600-50244000	Bivalent/Poised TSS	Fetal Brain Female	brain
33	chr3:50242800-50243600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr3:50242800-50243600	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
35	chr3:50242800-50243600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
36	chr3:50242800-50243600	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
37	chr3:50242800-50243600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr3:50242800-50243600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr3:50242800-50243600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr3:50242800-50243600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr3:50242800-50243600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr3:50242800-50243600	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
43	chr3:50242800-50243600	Flanking Active TSS	Right Ventricle	heart
44	chr3:50242800-50243600	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
45	chr3:50242800-50243800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
46	chr3:50242800-50243800	Bivalent Enhancer	Fetal Brain Male	brain
47	chr3:50242800-50243800	Flanking Bivalent TSS/Enh	Thymus	Thymus
48	chr3:50242800-50244000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr3:50243000-50243600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
50	chr3:50243000-50243600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell

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