The 2.0 version of rSNPBase

Variant report

Variant rs1995403
Chromosome Location chr1:45517580-45517581
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:45481200-45525000 Weak transcription Rectal Smooth Muscle rectum
2 chr1:45481200-45527400 Weak transcription Left Ventricle heart
3 chr1:45482000-45523800 Weak transcription Cortex derived primary cultured neurospheres brain
4 chr1:45497400-45525400 Weak transcription Gastric stomach
5 chr1:45498000-45525600 Weak transcription Pancreas Pancrea
6 chr1:45501800-45521200 Weak transcription Brain Hippocampus Middle brain
7 chr1:45501800-45527000 Weak transcription Fetal Brain Male brain
8 chr1:45502000-45523800 Weak transcription Brain Cingulate Gyrus brain
9 chr1:45502400-45523000 Weak transcription Aorta Aorta
10 chr1:45504200-45524200 Weak transcription Esophagus oesophagus
11 chr1:45504400-45524000 Weak transcription Rectal Mucosa Donor 31 rectum
12 chr1:45505000-45526000 Weak transcription Fetal Stomach stomach
13 chr1:45507600-45527000 Weak transcription Fetal Kidney kidney
14 chr1:45509000-45523000 Weak transcription Brain Angular Gyrus brain
15 chr1:45509000-45523800 Weak transcription Brain Inferior Temporal Lobe brain
16 chr1:45509000-45524000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
17 chr1:45509200-45521000 Weak transcription Brain Anterior Caudate brain
18 chr1:45509200-45522400 Weak transcription Duodenum Smooth Muscle Duodenum
19 chr1:45509600-45522400 Weak transcription Stomach Smooth Muscle stomach
20 chr1:45509600-45526200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
21 chr1:45511200-45521400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
22 chr1:45511400-45521400 Weak transcription Rectal Mucosa Donor 29 rectum
23 chr1:45512400-45523800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
24 chr1:45513600-45519600 Weak transcription Ovary ovary
25 chr1:45513600-45525400 Weak transcription Skeletal Muscle Male skeletal muscle
26 chr1:45513600-45526200 Weak transcription Skeletal Muscle Female skeletal muscle
27 chr1:45514400-45519200 Strong transcription HepG2 liver
28 chr1:45516400-45517600 Flanking Active TSS Primary T helper memory cells from peripheral blood 2 blood
29 chr1:45516400-45517600 Enhancers Fetal Adrenal Gland Adrenal Gland
30 chr1:45516400-45517600 Enhancers Fetal Intestine Large intestine
31 chr1:45516400-45517600 Enhancers Fetal Intestine Small intestine
32 chr1:45516400-45520000 Enhancers Primary B cells from peripheral blood blood
33 chr1:45516600-45517600 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
34 chr1:45516800-45517600 Flanking Active TSS Primary B cells from cord blood blood
35 chr1:45516800-45517600 Enhancers Stomach Mucosa stomach
36 chr1:45517000-45517600 Enhancers Dnd41 blood
37 chr1:45517000-45521200 Weak transcription Breast Myoepithelial Primary Cells Breast
38 chr1:45517000-45522800 Weak transcription Sigmoid Colon Sigmoid Colon
39 chr1:45517000-45525600 Weak transcription Small Intestine intestine
40 chr1:45517200-45517600 Enhancers Primary T regulatory cells fromperipheralblood blood
41 chr1:45517200-45521400 Weak transcription Brain Germinal Matrix brain
42 chr1:45517400-45517600 Enhancers Primary T cells from cord blood blood
43 chr1:45517400-45517600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
44 chr1:45517400-45517600 Enhancers Primary T helper cells PMA-I stimulated --
45 chr1:45517400-45517600 Enhancers Primary T killer naive cells fromperipheralblood blood
46 chr1:45517400-45517600 Enhancers Primary T killer memory cells from peripheral blood blood
47 chr1:45517400-45517600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
48 chr1:45517400-45517600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
49 chr1:45517400-45517600 Enhancers Duodenum Mucosa Duodenum
50 chr1:45517400-45517800 Enhancers Primary T cells fromperipheralblood blood

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Last update: Aug 31, 2015