The 2.0 version of rSNPBase

Variant report

Variant rs72684425
Chromosome Location chr1:45502494-45502495
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:45480800-45510400 Weak transcription Colon Smooth Muscle Colon
2 chr1:45481200-45504600 Weak transcription Colonic Mucosa Colon
3 chr1:45481200-45510200 Weak transcription Lung lung
4 chr1:45481200-45525000 Weak transcription Rectal Smooth Muscle rectum
5 chr1:45481200-45527400 Weak transcription Left Ventricle heart
6 chr1:45482000-45523800 Weak transcription Cortex derived primary cultured neurospheres brain
7 chr1:45491800-45516400 Weak transcription Spleen Spleen
8 chr1:45492000-45507600 Weak transcription Pancreatic Islets Pancreatic Islet
9 chr1:45494600-45504200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
10 chr1:45495000-45506800 Weak transcription Skeletal Muscle Male skeletal muscle
11 chr1:45497400-45525400 Weak transcription Gastric stomach
12 chr1:45498000-45525600 Weak transcription Pancreas Pancrea
13 chr1:45498200-45506800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
14 chr1:45499200-45516200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
15 chr1:45499600-45503200 Weak transcription GM12878-XiMat blood
16 chr1:45499800-45502600 Strong transcription Fetal Stomach stomach
17 chr1:45500000-45504800 Weak transcription Primary T cells fromperipheralblood blood
18 chr1:45500400-45505200 Weak transcription Right Ventricle heart
19 chr1:45500400-45516600 Weak transcription Sigmoid Colon Sigmoid Colon
20 chr1:45501200-45502800 Genic enhancers Fetal Intestine Small intestine
21 chr1:45501400-45516600 Weak transcription Small Intestine intestine
22 chr1:45501600-45504800 Enhancers Fetal Intestine Large intestine
23 chr1:45501800-45504400 Enhancers K562 blood
24 chr1:45501800-45505800 Weak transcription Breast Myoepithelial Primary Cells Breast
25 chr1:45501800-45508000 Weak transcription Brain Substantia Nigra brain
26 chr1:45501800-45516200 Weak transcription Primary T helper cells fromperipheralblood blood
27 chr1:45501800-45521200 Weak transcription Brain Hippocampus Middle brain
28 chr1:45501800-45527000 Weak transcription Fetal Brain Male brain
29 chr1:45502000-45503200 Weak transcription Brain Anterior Caudate brain
30 chr1:45502000-45503600 Weak transcription Duodenum Smooth Muscle Duodenum
31 chr1:45502000-45503800 Weak transcription Ovary ovary
32 chr1:45502000-45504000 Weak transcription Brain Germinal Matrix brain
33 chr1:45502000-45504000 Weak transcription Rectal Mucosa Donor 31 rectum
34 chr1:45502000-45504000 Weak transcription HepG2 liver
35 chr1:45502000-45507600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
36 chr1:45502000-45507600 Weak transcription Duodenum Mucosa Duodenum
37 chr1:45502000-45508000 Weak transcription Brain Angular Gyrus brain
38 chr1:45502000-45508000 Weak transcription Brain Inferior Temporal Lobe brain
39 chr1:45502000-45508000 Weak transcription Fetal Brain Female brain
40 chr1:45502000-45508200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
41 chr1:45502000-45508600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
42 chr1:45502000-45510600 Weak transcription Rectal Mucosa Donor 29 rectum
43 chr1:45502000-45512800 Weak transcription Skeletal Muscle Female skeletal muscle
44 chr1:45502000-45523800 Weak transcription Brain Cingulate Gyrus brain
45 chr1:45502400-45504000 Enhancers Hela-S3 cervix
46 chr1:45502400-45505200 Enhancers Fetal Adrenal Gland Adrenal Gland
47 chr1:45502400-45507800 Weak transcription Stomach Smooth Muscle stomach
48 chr1:45502400-45523000 Weak transcription Aorta Aorta

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Last update: Aug 31, 2015