Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10861451	0.81[AMR][1000 genomes]
rs10861452	0.81[AMR][1000 genomes]
rs10861456	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112570	0.81[AMR][1000 genomes]
rs11112596	0.82[EUR][1000 genomes]
rs11513893	0.81[AMR][1000 genomes]
rs11513895	0.81[AMR][1000 genomes]
rs12322634	0.81[AMR][1000 genomes]
rs1317555	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1526844	0.81[EUR][1000 genomes]
rs1806811	0.81[EUR][1000 genomes]
rs2049571	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2049572	0.86[EUR][1000 genomes]
rs2694388	0.84[EUR][1000 genomes]
rs2694390	0.84[EUR][1000 genomes]
rs2694394	0.88[EUR][1000 genomes]
rs2694395	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2694398	0.81[AMR][1000 genomes]
rs2694399	0.84[EUR][1000 genomes]
rs2694400	0.84[EUR][1000 genomes]
rs2694401	0.81[AMR][1000 genomes]
rs2711732	0.81[EUR][1000 genomes]
rs2711734	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2711735	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2711736	0.84[EUR][1000 genomes]
rs2711739	0.84[EUR][1000 genomes]
rs2711741	0.81[EUR][1000 genomes]
rs4468444	0.81[EUR][1000 genomes]
rs73387413	0.81[AMR][1000 genomes]
rs73387428	0.81[AMR][1000 genomes]
rs876929	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs885131	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs941105	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899501	chr12:105819046-105950801	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832507	chr12:105821685-106005186	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105932000-105934000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr12:105932000-105934000	Enhancers	Fetal Muscle Leg	muscle
3	chr12:105932200-105934000	Enhancers	HSMM	muscle
4	chr12:105932200-105934000	Enhancers	HSMMtube	muscle
5	chr12:105932400-105934000	Enhancers	Colon Smooth Muscle	Colon
6	chr12:105932400-105934000	Enhancers	Stomach Smooth Muscle	stomach
7	chr12:105932400-105934200	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr12:105932400-105934200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr12:105932800-105934000	Enhancers	Fetal Stomach	stomach
10	chr12:105932800-105935800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr12:105932800-105937000	Strong transcription	HUVEC	blood vessel
12	chr12:105933400-105934000	Enhancers	Psoas Muscle	Psoas

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