Variant report

Variant	rs941105
Chromosome Location	chr12:105944243-105944244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105942937..105945228-chr12:105946736..105948903,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C12orf75-5	chr12:105943354-105946670	NONHSAT030457

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10861456	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10861457	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10861461	0.81[ASN][1000 genomes]
rs11112595	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11112596	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1317555	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1526844	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1526846	0.82[ASN][1000 genomes]
rs1806811	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1997174	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2049571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2049572	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2374514	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2374515	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2694388	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2694390	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2694394	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2694395	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2694398	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2694399	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2694400	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2694401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2694404	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2711732	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2711734	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2711735	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2711736	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2711737	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2711739	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2711741	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2888859	0.87[ASN][1000 genomes]
rs4468444	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs876929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs885131	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899501	chr12:105819046-105950801	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832507	chr12:105821685-106005186	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1039068	chr12:105935786-106211250	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv826510	chr12:105941190-105944641	Weak transcription Strong transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105938200-105946600	Strong transcription	HUVEC	blood vessel
2	chr12:105938800-105964600	Weak transcription	Aorta	Aorta
3	chr12:105942200-105947800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr12:105944200-105945400	Strong transcription	HSMMtube	muscle

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