Variant report

Variant	rs2711735
Chromosome Location	chr12:105957222-105957223
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105944792..105946780-chr12:105955206..105957369,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C12orf75-6	chr12:105955031-105962713	NONHSAT030458

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10735407	0.82[ASN][1000 genomes]
rs10861456	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10861457	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10861461	0.83[ASN][1000 genomes]
rs11112595	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11112596	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1317555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1526844	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1526846	0.86[ASN][1000 genomes]
rs1806811	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1997174	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2049571	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2049572	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2374514	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2374515	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2694388	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2694390	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2694394	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2694395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2694398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2694399	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2694400	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2694401	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2694404	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2711732	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2711734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2711736	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2711737	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2711739	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2711741	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2888859	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4468444	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs876929	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs885131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs941105	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832507	chr12:105821685-106005186	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1039068	chr12:105935786-106211250	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105938800-105964600	Weak transcription	Aorta	Aorta
2	chr12:105954600-105957400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr12:105955000-105958000	Enhancers	Fetal Muscle Leg	muscle
4	chr12:105955400-105958200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr12:105956400-105958000	Weak transcription	HUVEC	blood vessel
6	chr12:105956400-105967400	Weak transcription	Left Ventricle	heart
7	chr12:105956600-105957400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr12:105956600-105979000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr12:105956800-105957800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr12:105957000-105957400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr12:105957000-105957400	Enhancers	Fetal Muscle Trunk	muscle
12	chr12:105957000-105957400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr12:105957000-105958400	Enhancers	Hela-S3	cervix
14	chr12:105957200-105958200	Enhancers	Fetal Heart	heart
15	chr12:105957200-105958200	Enhancers	A549	lung
16	chr12:105957200-105959200	Weak transcription	HSMMtube	muscle
17	chr12:105957200-105960800	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links