Variant report

Variant	rs2711737
Chromosome Location	chr12:105975144-105975145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10735407	0.81[ASN][1000 genomes]
rs10861461	0.88[ASN][1000 genomes]
rs11112595	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11112596	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1317555	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1526844	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1526846	0.85[ASN][1000 genomes]
rs1806811	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2049571	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2049572	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2374514	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2374515	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2694388	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2694390	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2694394	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2694395	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2694398	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2694399	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2694400	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2694401	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2694404	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2711732	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2711734	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2711735	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2711736	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2711739	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2711741	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2888859	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4468444	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs876929	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs885131	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs941105	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832507	chr12:105821685-106005186	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1039068	chr12:105935786-106211250	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105956600-105979000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:105965000-105979000	Weak transcription	Aorta	Aorta
3	chr12:105969800-105978000	Weak transcription	HSMMtube	muscle
4	chr12:105973800-105975400	Enhancers	Hela-S3	cervix
5	chr12:105974200-105975400	Enhancers	HUVEC	blood vessel
6	chr12:105974800-105975600	Enhancers	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links