Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1884185	0.84[ASN][1000 genomes]
rs2300063	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs2572095	1.00[CHD][hapmap];0.83[JPT][hapmap]
rs2572099	0.87[ASN][1000 genomes]
rs2572105	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2572109	0.87[ASN][1000 genomes]
rs2572117	0.89[EUR][1000 genomes]
rs2572121	0.89[EUR][1000 genomes]
rs2572122	0.89[EUR][1000 genomes]
rs2572131	0.89[EUR][1000 genomes]
rs2572136	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2747731	0.87[ASN][1000 genomes]
rs2747733	0.87[ASN][1000 genomes]
rs2747734	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2747743	0.89[EUR][1000 genomes]
rs2747749	0.88[EUR][1000 genomes]
rs28488166	0.84[ASN][1000 genomes]
rs55923681	0.84[ASN][1000 genomes]
rs73505759	0.83[ASN][1000 genomes]
rs7742800	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs7759571	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9372982	0.88[CHB][hapmap];0.97[CHD][hapmap]
rs9375721	0.88[CHB][hapmap];0.95[CHD][hapmap]
rs9385544	0.88[CHB][hapmap]
rs9388895	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs9388899	0.84[ASN][1000 genomes]
rs9388909	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604253	chr6:98857397-99630038	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1997936	FBXL4	cis	parietal	SCAN
rs1997936	FBXL4	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:99433000-99436200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:99434400-99436200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:99434800-99440000	Weak transcription	Fetal Heart	heart

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